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| Mutant Information |
|---|
| Mutant Name | FN2119-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2119-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2801987 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 22130196 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 28676611 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 31762369 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 7133452 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12877897 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 17871399 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14769251 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 26374438 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26856302 | C-T | Homo | INTRON | |
| SBS | Chr4 | 18771513 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g094100 |
| SBS | Chr5 | 21696204 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 21696206 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 2466160 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10692410 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 372572 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 437754 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 6420979 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 93071 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 3935174 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 23047322 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 23259317 | C-A | Hetero | INTRON | |
| SBS | Chr8 | 26697064 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 18748509 | G-C | Hetero | INTRON | |
| SBS | Chr10 | 8819830 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7843544 | G-A | Hetero | START_GAINED | |
| SBS | Chr11 | 15378761 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 17065854 | G-A | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1566682 | 1566688 | 6 | |
| Deletion | Chr7 | 3896661 | 3896663 | 2 | |
| Deletion | Chr2 | 10752047 | 10752058 | 11 | |
| Deletion | Chr11 | 14610997 | 14610998 | 1 | |
| Deletion | Chr1 | 16902332 | 16902335 | 3 | |
| Deletion | Chr1 | 18014635 | 18014720 | 85 | |
| Deletion | Chr7 | 20958609 | 20958612 | 3 | |
| Deletion | Chr7 | 22870317 | 22870328 | 11 | |
| Deletion | Chr4 | 26181028 | 26181030 | 2 | |
| Deletion | Chr2 | 26839001 | 26861000 | 21999 | OsKitaake02g268000 |
| Deletion | Chr1 | 27170196 | 27170200 | 4 | |
| Deletion | Chr2 | 36947878 | 36947879 | 1 | |
| Deletion | Chr1 | 43241577 | 43241579 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 2897286 | 2897292 | 5 | |
| Insertion | Chr6 | 4459547 | 4459550 | 2 | |
| Insertion | Chr6 | 7662205 | 7662208 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 26845154 | 26962419 | OsKitaake02g269100 |
| Inversion | Chr2 | 26858983 | 26962424 | OsKitaake02g269100 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 3545488 | Chr6 | 20211156 | OsKitaake08g039700 |
| Translocation | Chr8 | 3547986 | Chr6 | 20211144 | OsKitaake08g039700 |