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Mutant Information

Mutant Name	FN2120-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2120-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1704876 A-T Homo INTERGENIC
SBS Chr1 11949538 A-T Hetero INTERGENIC
SBS Chr1 12864855 G-A Homo INTERGENIC
SBS Chr1 20995340 G-T Homo INTRON
SBS Chr1 41588538 A-C Homo INTRON
SBS Chr2 3657420 C-T Hetero INTERGENIC
SBS Chr2 10280343 T-A Hetero INTERGENIC
SBS Chr2 11476635 C-T Hetero INTERGENIC
SBS Chr2 19571763 A-G Hetero INTERGENIC
SBS Chr2 36480122 C-A Homo INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 2992513 G-C Hetero INTERGENIC
SBS Chr3 3356409 G-A Hetero INTERGENIC
SBS Chr3 3733903 A-G Hetero INTERGENIC
SBS Chr3 4251563 A-T Hetero INTRON
SBS Chr3 24759953 C-T Homo INTERGENIC
SBS Chr4 1606536 G-A Homo INTERGENIC
SBS Chr4 16976461 T-C Homo INTERGENIC
SBS Chr4 16976547 A-G Homo INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr6 10587850 A-G Hetero INTRON
SBS Chr6 19836266 G-A Homo INTERGENIC
SBS Chr8 10067765 A-C Homo INTERGENIC
SBS Chr8 17687674 C-A Homo INTERGENIC
SBS Chr8 24769252 C-T Homo UTR_3_PRIME
SBS Chr9 18761374 A-T Homo INTRON
SBS Chr10 1574701 G-C Hetero INTERGENIC
SBS Chr10 13262121 G-A Hetero INTERGENIC
SBS Chr11 13015076 T-C Hetero INTERGENIC
SBS Chr11 14674067 G-A Hetero INTERGENIC
SBS Chr11 17127513 C-A Hetero INTERGENIC
SBS Chr11 18399553 C-T Hetero INTERGENIC
SBS Chr12 8835090 C-A Hetero INTERGENIC
SBS Chr12 10311594 C-T Hetero INTERGENIC
SBS Chr12 14960928 T-C Hetero INTERGENIC
SBS Chr12 22474635 G-A Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 7773880 7773881 1 OsKitaake03g107600
Deletion Chr1 9808151 9808159 8
Deletion Chr1 10300036 10300050 14
Deletion Chr6 11554348 11554353 5
Deletion Chr9 13561981 13561986 5
Deletion Chr9 13686844 13686858 14
Deletion Chr4 13717787 13717791 4
Deletion Chr9 14267001 14278000 10999 OsKitaake09g096000
Deletion Chr9 14629483 14629491 8
Deletion Chr4 14727696 14727697 1
Deletion Chr7 15669982 15669984 2
Deletion Chr10 17643371 17643372 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 97031 97034 2
Insertion Chr9 1077229 1077232 2
Insertion Chr10 6820520 6820522 1
Insertion Chr11 23529392 23529395 2
Insertion Chr12 19745588 19745591 2
Insertion Chr7 22848895 22848898 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 13382292 14267393 OsKitaake09g096000
Inversion Chr9 13390336 14278450 OsKitaake09g089100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 19882383 Chr9 22550816
Translocation Chr11 19882390 Chr9 22627820 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1704876	A-T	Homo	INTERGENIC
SBS	Chr1	11949538	A-T	Hetero	INTERGENIC
SBS	Chr1	12864855	G-A	Homo	INTERGENIC
SBS	Chr1	20995340	G-T	Homo	INTRON
SBS	Chr1	41588538	A-C	Homo	INTRON
SBS	Chr2	3657420	C-T	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Hetero	INTERGENIC
SBS	Chr2	19571763	A-G	Hetero	INTERGENIC
SBS	Chr2	36480122	C-A	Homo	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	2992513	G-C	Hetero	INTERGENIC
SBS	Chr3	3356409	G-A	Hetero	INTERGENIC
SBS	Chr3	3733903	A-G	Hetero	INTERGENIC
SBS	Chr3	4251563	A-T	Hetero	INTRON
SBS	Chr3	24759953	C-T	Homo	INTERGENIC
SBS	Chr4	1606536	G-A	Homo	INTERGENIC
SBS	Chr4	16976461	T-C	Homo	INTERGENIC
SBS	Chr4	16976547	A-G	Homo	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr6	10587850	A-G	Hetero	INTRON
SBS	Chr6	19836266	G-A	Homo	INTERGENIC
SBS	Chr8	10067765	A-C	Homo	INTERGENIC
SBS	Chr8	17687674	C-A	Homo	INTERGENIC
SBS	Chr8	24769252	C-T	Homo	UTR_3_PRIME
SBS	Chr9	18761374	A-T	Homo	INTRON
SBS	Chr10	1574701	G-C	Hetero	INTERGENIC
SBS	Chr10	13262121	G-A	Hetero	INTERGENIC
SBS	Chr11	13015076	T-C	Hetero	INTERGENIC
SBS	Chr11	14674067	G-A	Hetero	INTERGENIC
SBS	Chr11	17127513	C-A	Hetero	INTERGENIC
SBS	Chr11	18399553	C-T	Hetero	INTERGENIC
SBS	Chr12	8835090	C-A	Hetero	INTERGENIC
SBS	Chr12	10311594	C-T	Hetero	INTERGENIC
SBS	Chr12	14960928	T-C	Hetero	INTERGENIC
SBS	Chr12	22474635	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	7773880	7773881	1	OsKitaake03g107600
Deletion	Chr1	9808151	9808159	8
Deletion	Chr1	10300036	10300050	14
Deletion	Chr6	11554348	11554353	5
Deletion	Chr9	13561981	13561986	5
Deletion	Chr9	13686844	13686858	14
Deletion	Chr4	13717787	13717791	4
Deletion	Chr9	14267001	14278000	10999	OsKitaake09g096000
Deletion	Chr9	14629483	14629491	8
Deletion	Chr4	14727696	14727697	1
Deletion	Chr7	15669982	15669984	2
Deletion	Chr10	17643371	17643372	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	13382292	14267393	OsKitaake09g096000
Inversion	Chr9	13390336	14278450	OsKitaake09g089100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes