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Mutant Information

Mutant Name	FN2125-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2125-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31788029 G-A Hetero INTERGENIC
SBS Chr1 43747607 A-T Hetero UTR_3_PRIME
SBS Chr2 16241697 G-T Homo INTERGENIC
SBS Chr2 18877239 T-C Hetero INTRON
SBS Chr2 27792437 T-C Hetero INTRON
SBS Chr2 31754226 G-A Homo INTERGENIC
SBS Chr2 33637940 G-A Homo INTERGENIC
SBS Chr3 12127339 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g164200
SBS Chr3 15189011 T-C Hetero INTERGENIC
SBS Chr3 35585208 T-A Hetero UTR_3_PRIME
SBS Chr3 35693058 G-A Hetero INTERGENIC
SBS Chr4 8318523 C-A Homo INTRON
SBS Chr4 15806285 C-T Homo UTR_3_PRIME
SBS Chr4 24885521 G-A Hetero INTERGENIC
SBS Chr4 25946030 A-G Hetero INTERGENIC
SBS Chr5 18723932 T-C Hetero INTERGENIC
SBS Chr5 24719751 A-G Hetero INTERGENIC
SBS Chr5 27224232 A-T Hetero INTERGENIC
SBS Chr6 12925039 C-T Homo INTERGENIC
SBS Chr6 14829718 G-A Hetero INTERGENIC
SBS Chr6 18067073 T-A Homo INTERGENIC
SBS Chr6 27677667 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g250600
SBS Chr6 28340644 C-G Hetero INTERGENIC
SBS Chr6 28354814 C-A Hetero INTRON
SBS Chr6 28359623 G-T Hetero INTRON
SBS Chr7 8081538 T-C Homo INTERGENIC
SBS Chr7 8349770 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 22595697 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g193200
SBS Chr7 24410136 T-A Hetero INTRON
SBS Chr7 25719215 C-G Hetero INTRON
SBS Chr8 23181888 C-T Hetero INTERGENIC
SBS Chr9 7796051 C-T Homo INTERGENIC
SBS Chr9 13484492 C-G Homo INTERGENIC
SBS Chr9 16542465 C-A Homo INTERGENIC
SBS Chr10 17040235 T-A Homo INTERGENIC
SBS Chr11 1946503 G-A Homo INTERGENIC
SBS Chr11 24407355 G-A Homo INTERGENIC
SBS Chr12 3654852 A-G Hetero INTERGENIC
SBS Chr12 11349373 G-C Hetero INTRON
SBS Chr12 17395521 C-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 10559001 10676000 116999 9
Deletion Chr12 10688001 10863000 174999 10
Deletion Chr12 10879001 10998000 118999 3
Deletion Chr12 11131001 11273000 141999 OsKitaake12g102200
Deletion Chr11 11731895 11731903 8
Deletion Chr10 12455900 12455901 1
Deletion Chr10 13772215 13772216 1
Deletion Chr7 14207345 14207347 2
Deletion Chr7 16873657 16873658 1
Deletion Chr1 17189332 17189497 165
Deletion Chr9 20365152 20365154 2
Deletion Chr4 20801001 20865000 63999 8
Deletion Chr3 25584873 25584875 2
Deletion Chr3 26192550 26192559 9
Deletion Chr11 27004305 27004309 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 33687119 33687123 3
Insertion Chr5 21062537 21062540 2
Insertion Chr7 13341701 13341703 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 24866685 25307843 2
Inversion Chr3 26217736 26995948

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10564068 Chr11 23301561 OsKitaake11g185600
Translocation Chr7 23487489 Chr4 25255621
Translocation Chr7 23490687 Chr4 25255609 OsKitaake07g205800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31788029	G-A	Hetero	INTERGENIC
SBS	Chr1	43747607	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	16241697	G-T	Homo	INTERGENIC
SBS	Chr2	18877239	T-C	Hetero	INTRON
SBS	Chr2	27792437	T-C	Hetero	INTRON
SBS	Chr2	31754226	G-A	Homo	INTERGENIC
SBS	Chr2	33637940	G-A	Homo	INTERGENIC
SBS	Chr3	12127339	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g164200
SBS	Chr3	15189011	T-C	Hetero	INTERGENIC
SBS	Chr3	35585208	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	35693058	G-A	Hetero	INTERGENIC
SBS	Chr4	8318523	C-A	Homo	INTRON
SBS	Chr4	15806285	C-T	Homo	UTR_3_PRIME
SBS	Chr4	24885521	G-A	Hetero	INTERGENIC
SBS	Chr4	25946030	A-G	Hetero	INTERGENIC
SBS	Chr5	18723932	T-C	Hetero	INTERGENIC
SBS	Chr5	24719751	A-G	Hetero	INTERGENIC
SBS	Chr5	27224232	A-T	Hetero	INTERGENIC
SBS	Chr6	12925039	C-T	Homo	INTERGENIC
SBS	Chr6	14829718	G-A	Hetero	INTERGENIC
SBS	Chr6	18067073	T-A	Homo	INTERGENIC
SBS	Chr6	27677667	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g250600
SBS	Chr6	28340644	C-G	Hetero	INTERGENIC
SBS	Chr6	28354814	C-A	Hetero	INTRON
SBS	Chr6	28359623	G-T	Hetero	INTRON
SBS	Chr7	8081538	T-C	Homo	INTERGENIC
SBS	Chr7	8349770	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	22595697	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g193200
SBS	Chr7	24410136	T-A	Hetero	INTRON
SBS	Chr7	25719215	C-G	Hetero	INTRON
SBS	Chr8	23181888	C-T	Hetero	INTERGENIC
SBS	Chr9	7796051	C-T	Homo	INTERGENIC
SBS	Chr9	13484492	C-G	Homo	INTERGENIC
SBS	Chr9	16542465	C-A	Homo	INTERGENIC
SBS	Chr10	17040235	T-A	Homo	INTERGENIC
SBS	Chr11	1946503	G-A	Homo	INTERGENIC
SBS	Chr11	24407355	G-A	Homo	INTERGENIC
SBS	Chr12	3654852	A-G	Hetero	INTERGENIC
SBS	Chr12	11349373	G-C	Hetero	INTRON
SBS	Chr12	17395521	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	10559001	10676000	116999	9
Deletion	Chr12	10688001	10863000	174999	10
Deletion	Chr12	10879001	10998000	118999	3
Deletion	Chr12	11131001	11273000	141999	OsKitaake12g102200
Deletion	Chr11	11731895	11731903	8
Deletion	Chr10	12455900	12455901	1
Deletion	Chr10	13772215	13772216	1
Deletion	Chr7	14207345	14207347	2
Deletion	Chr7	16873657	16873658	1
Deletion	Chr1	17189332	17189497	165
Deletion	Chr9	20365152	20365154	2
Deletion	Chr4	20801001	20865000	63999	8
Deletion	Chr3	25584873	25584875	2
Deletion	Chr3	26192550	26192559	9
Deletion	Chr11	27004305	27004309	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	24866685	25307843	2
Inversion	Chr3	26217736	26995948

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes