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Mutant Information

Mutant Name	FN2130-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2130-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12302376 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g149200
SBS Chr1 19704269 T-C Hetero INTERGENIC
SBS Chr1 32503147 C-A Hetero INTRON
SBS Chr2 7481203 C-T Hetero INTERGENIC
SBS Chr2 19231276 G-A Hetero INTERGENIC
SBS Chr2 26165952 A-G Hetero INTERGENIC
SBS Chr2 27948098 T-A Hetero INTRON
SBS Chr2 27948099 A-T Hetero INTRON
SBS Chr2 29846976 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g301900
SBS Chr2 34188976 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g354900
SBS Chr3 3156573 C-T Hetero INTERGENIC
SBS Chr3 4032734 A-T Hetero INTERGENIC
SBS Chr3 26484847 C-T Homo SYNONYMOUS_CODING
SBS Chr3 33203973 G-T Homo INTRON
SBS Chr4 17535680 C-A Hetero INTERGENIC
SBS Chr5 7109690 C-T Hetero INTERGENIC
SBS Chr6 8160314 G-T Hetero INTERGENIC
SBS Chr6 8900789 G-A Hetero INTERGENIC
SBS Chr6 10116646 C-T Hetero INTRON
SBS Chr6 13243518 G-A Hetero INTERGENIC
SBS Chr6 19090773 T-A Hetero INTERGENIC
SBS Chr6 19709183 C-G Hetero INTERGENIC
SBS Chr6 23214113 C-T Hetero INTERGENIC
SBS Chr6 29090969 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g268300
SBS Chr7 2728006 G-A Hetero INTERGENIC
SBS Chr7 3113289 T-C Hetero INTERGENIC
SBS Chr7 26156901 C-T Hetero INTERGENIC
SBS Chr7 27235034 G-A Hetero INTERGENIC
SBS Chr8 2316900 C-T Hetero INTERGENIC
SBS Chr8 21462627 T-C Hetero INTERGENIC
SBS Chr8 24918704 C-A Hetero INTERGENIC
SBS Chr9 10148204 C-G Hetero INTERGENIC
SBS Chr9 11302506 C-A Hetero INTERGENIC
SBS Chr9 12773305 G-A Hetero INTERGENIC
SBS Chr9 16265813 T-C Hetero INTERGENIC
SBS Chr9 19524664 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g159400
SBS Chr10 7904065 A-G Hetero INTERGENIC
SBS Chr10 20380666 G-A Hetero INTERGENIC
SBS Chr11 9367322 T-C Homo INTERGENIC
SBS Chr11 19968328 C-A Hetero INTERGENIC
SBS Chr11 25568059 G-A Homo INTERGENIC
SBS Chr12 19692056 G-T Hetero INTERGENIC
SBS Chr12 22492247 G-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 130001 261000 130999 19
Deletion Chr7 1582687 1582689 2
Deletion Chr6 7225338 7225340 2
Deletion Chr8 8864255 8864257 2
Deletion Chr2 10266413 10266415 2
Deletion Chr1 10847889 10847894 5
Deletion Chr3 13231798 13231811 13
Deletion Chr1 23222570 23222572 2 OsKitaake01g222000
Deletion Chr4 23424202 23424206 4
Deletion Chr11 26958780 26959206 426
Deletion Chr8 28560395 28560400 5
Deletion Chr4 36339880 36339885 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 2142010 2142013 2
Insertion Chr2 29830062 29830065 2
Insertion Chr2 34000365 34000368 2
Insertion Chr3 25807400 25807403 2
Insertion Chr7 4036415 4036418 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12302376	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g149200
SBS	Chr1	19704269	T-C	Hetero	INTERGENIC
SBS	Chr1	32503147	C-A	Hetero	INTRON
SBS	Chr2	7481203	C-T	Hetero	INTERGENIC
SBS	Chr2	19231276	G-A	Hetero	INTERGENIC
SBS	Chr2	26165952	A-G	Hetero	INTERGENIC
SBS	Chr2	27948098	T-A	Hetero	INTRON
SBS	Chr2	27948099	A-T	Hetero	INTRON
SBS	Chr2	29846976	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g301900
SBS	Chr2	34188976	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g354900
SBS	Chr3	3156573	C-T	Hetero	INTERGENIC
SBS	Chr3	4032734	A-T	Hetero	INTERGENIC
SBS	Chr3	26484847	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	33203973	G-T	Homo	INTRON
SBS	Chr4	17535680	C-A	Hetero	INTERGENIC
SBS	Chr5	7109690	C-T	Hetero	INTERGENIC
SBS	Chr6	8160314	G-T	Hetero	INTERGENIC
SBS	Chr6	8900789	G-A	Hetero	INTERGENIC
SBS	Chr6	10116646	C-T	Hetero	INTRON
SBS	Chr6	13243518	G-A	Hetero	INTERGENIC
SBS	Chr6	19090773	T-A	Hetero	INTERGENIC
SBS	Chr6	19709183	C-G	Hetero	INTERGENIC
SBS	Chr6	23214113	C-T	Hetero	INTERGENIC
SBS	Chr6	29090969	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g268300
SBS	Chr7	2728006	G-A	Hetero	INTERGENIC
SBS	Chr7	3113289	T-C	Hetero	INTERGENIC
SBS	Chr7	26156901	C-T	Hetero	INTERGENIC
SBS	Chr7	27235034	G-A	Hetero	INTERGENIC
SBS	Chr8	2316900	C-T	Hetero	INTERGENIC
SBS	Chr8	21462627	T-C	Hetero	INTERGENIC
SBS	Chr8	24918704	C-A	Hetero	INTERGENIC
SBS	Chr9	10148204	C-G	Hetero	INTERGENIC
SBS	Chr9	11302506	C-A	Hetero	INTERGENIC
SBS	Chr9	12773305	G-A	Hetero	INTERGENIC
SBS	Chr9	16265813	T-C	Hetero	INTERGENIC
SBS	Chr9	19524664	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g159400
SBS	Chr10	7904065	A-G	Hetero	INTERGENIC
SBS	Chr10	20380666	G-A	Hetero	INTERGENIC
SBS	Chr11	9367322	T-C	Homo	INTERGENIC
SBS	Chr11	19968328	C-A	Hetero	INTERGENIC
SBS	Chr11	25568059	G-A	Homo	INTERGENIC
SBS	Chr12	19692056	G-T	Hetero	INTERGENIC
SBS	Chr12	22492247	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	130001	261000	130999	19
Deletion	Chr7	1582687	1582689	2
Deletion	Chr6	7225338	7225340	2
Deletion	Chr8	8864255	8864257	2
Deletion	Chr2	10266413	10266415	2
Deletion	Chr1	10847889	10847894	5
Deletion	Chr3	13231798	13231811	13
Deletion	Chr1	23222570	23222572	2	OsKitaake01g222000
Deletion	Chr4	23424202	23424206	4
Deletion	Chr11	26958780	26959206	426
Deletion	Chr8	28560395	28560400	5
Deletion	Chr4	36339880	36339885	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes