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Mutant Information

Mutant Name	FN2134-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2134-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 60

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 639697 C-A Hetero INTERGENIC
SBS Chr1 2931854 C-T Hetero INTERGENIC
SBS Chr1 9880114 G-A Hetero INTERGENIC
SBS Chr1 13251170 T-C Hetero INTERGENIC
SBS Chr1 13663408 G-A Hetero INTERGENIC
SBS Chr1 17726437 T-A Hetero INTERGENIC
SBS Chr1 27769219 G-A Hetero INTERGENIC
SBS Chr1 35700495 C-T Hetero INTERGENIC
SBS Chr1 41703614 C-T Homo INTRON
SBS Chr2 20099920 C-T Hetero INTERGENIC
SBS Chr2 22087621 T-C Hetero INTERGENIC
SBS Chr2 30110189 G-A Hetero INTERGENIC
SBS Chr2 31514304 G-A Homo INTERGENIC
SBS Chr2 31803925 T-A Hetero INTRON
SBS Chr2 33808950 T-C Hetero INTERGENIC
SBS Chr3 4138597 G-A Hetero INTERGENIC
SBS Chr3 16810494 C-G Hetero INTERGENIC
SBS Chr3 24632819 C-A Hetero INTERGENIC
SBS Chr3 25834541 C-T Hetero INTERGENIC
SBS Chr3 32940962 C-A Homo INTERGENIC
SBS Chr4 1432572 G-A Hetero INTERGENIC
SBS Chr4 4898220 C-T Hetero INTERGENIC
SBS Chr4 7286652 G-A Homo INTERGENIC
SBS Chr4 9246442 G-A Hetero UTR_5_PRIME
SBS Chr4 28148935 A-G Hetero INTERGENIC
SBS Chr4 31316167 A-T Hetero UTR_5_PRIME
SBS Chr4 31316169 C-T Hetero UTR_5_PRIME
SBS Chr4 35474260 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g301200
SBS Chr4 36505686 G-A Hetero INTERGENIC
SBS Chr5 4920914 G-A Hetero INTRON
SBS Chr6 2982330 A-C Homo INTERGENIC
SBS Chr7 13134328 G-A Hetero INTERGENIC
SBS Chr7 14968645 G-C Hetero INTERGENIC
SBS Chr7 17345800 T-A Hetero INTERGENIC
SBS Chr7 18944248 C-T Hetero INTERGENIC
SBS Chr7 25445823 A-G Hetero INTERGENIC
SBS Chr8 3357118 T-C Homo INTRON
SBS Chr8 7089818 A-G Homo INTERGENIC
SBS Chr8 8108697 T-A Homo INTERGENIC
SBS Chr8 8108698 T-A Homo INTERGENIC
SBS Chr8 19572559 T-A Hetero INTERGENIC
SBS Chr8 28926383 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 4676564 C-T Hetero INTERGENIC
SBS Chr9 5440710 A-T Homo INTERGENIC
SBS Chr9 5587070 C-T Hetero INTRON
SBS Chr9 6865631 A-T Homo INTERGENIC
SBS Chr10 3380825 C-T Hetero INTERGENIC
SBS Chr10 3938844 C-G Hetero INTRON
SBS Chr10 10626376 G-A Hetero INTERGENIC
SBS Chr10 11250954 A-T Hetero INTERGENIC
SBS Chr10 11326138 A-G Hetero INTERGENIC
SBS Chr10 20781713 T-A Hetero INTERGENIC
SBS Chr11 13434997 C-T Hetero INTERGENIC
SBS Chr11 14284288 C-G Hetero INTERGENIC
SBS Chr11 16285221 A-T Hetero INTERGENIC
SBS Chr11 24894212 C-A Homo INTERGENIC
SBS Chr11 27369453 G-A Hetero INTERGENIC
SBS Chr12 3705588 A-G Homo INTERGENIC
SBS Chr12 15136796 G-T Hetero INTERGENIC
SBS Chr12 18863206 T-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 307583 307600 17
Deletion Chr7 2396006 2396015 9
Deletion Chr7 2972388 2972394 6
Deletion Chr5 3272063 3272065 2
Deletion Chr2 5053029 5053030 1
Deletion Chr3 5087900 5087901 1
Deletion Chr4 5997001 6072000 74999 3
Deletion Chr9 6752945 6752948 3
Deletion Chr10 6950401 6950405 4 OsKitaake10g046500
Deletion Chr9 8835794 8835795 1
Deletion Chr9 8917357 8917360 3
Deletion Chr1 13097918 13097922 4
Deletion Chr5 18893899 18893900 1 OsKitaake05g147600
Deletion Chr2 23216469 23216470 1
Deletion Chr8 24321413 24321418 5
Deletion Chr8 27963528 27963543 15
Deletion Chr2 33421007 33421016 9
Deletion Chr1 44084210 44084212 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21765199 21765203 3
Insertion Chr6 6466487 6466490 2
Insertion Chr11 17598106 17598109 2

Inversions: 12

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 5999644 6366448 OsKitaake04g032100
Inversion Chr6 9087981 9129671 OsKitaake06g109200
Inversion Chr6 9087984 9129686 OsKitaake06g109200
Inversion Chr10 13872586 13943089 OsKitaake10g084800
Inversion Chr10 13874147 13943088 OsKitaake10g084800
Inversion Chr9 20239429 20335928 OsKitaake09g170900
Inversion Chr9 20239445 20335943 OsKitaake09g170900
Inversion Chr4 29002932 29018046 OsKitaake04g219000
Inversion Chr4 29004189 29641518
Inversion Chr4 29004591 29641523
Inversion Chr4 29017814 29512187 OsKitaake04g226300
Inversion Chr4 29301025 29512193 OsKitaake04g226300

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 6933436 Chr1 17573388
Translocation Chr4 17942023 Chr1 17573388
Translocation Chr11 18709399 Chr10 6933771
Translocation Chr11 18709457 Chr10 6933588
Translocation Chr6 18890490 Chr4 29296206
Translocation Chr6 18890500 Chr4 29295885

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	639697	C-A	Hetero	INTERGENIC
SBS	Chr1	2931854	C-T	Hetero	INTERGENIC
SBS	Chr1	9880114	G-A	Hetero	INTERGENIC
SBS	Chr1	13251170	T-C	Hetero	INTERGENIC
SBS	Chr1	13663408	G-A	Hetero	INTERGENIC
SBS	Chr1	17726437	T-A	Hetero	INTERGENIC
SBS	Chr1	27769219	G-A	Hetero	INTERGENIC
SBS	Chr1	35700495	C-T	Hetero	INTERGENIC
SBS	Chr1	41703614	C-T	Homo	INTRON
SBS	Chr2	20099920	C-T	Hetero	INTERGENIC
SBS	Chr2	22087621	T-C	Hetero	INTERGENIC
SBS	Chr2	30110189	G-A	Hetero	INTERGENIC
SBS	Chr2	31514304	G-A	Homo	INTERGENIC
SBS	Chr2	31803925	T-A	Hetero	INTRON
SBS	Chr2	33808950	T-C	Hetero	INTERGENIC
SBS	Chr3	4138597	G-A	Hetero	INTERGENIC
SBS	Chr3	16810494	C-G	Hetero	INTERGENIC
SBS	Chr3	24632819	C-A	Hetero	INTERGENIC
SBS	Chr3	25834541	C-T	Hetero	INTERGENIC
SBS	Chr3	32940962	C-A	Homo	INTERGENIC
SBS	Chr4	1432572	G-A	Hetero	INTERGENIC
SBS	Chr4	4898220	C-T	Hetero	INTERGENIC
SBS	Chr4	7286652	G-A	Homo	INTERGENIC
SBS	Chr4	9246442	G-A	Hetero	UTR_5_PRIME
SBS	Chr4	28148935	A-G	Hetero	INTERGENIC
SBS	Chr4	31316167	A-T	Hetero	UTR_5_PRIME
SBS	Chr4	31316169	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	35474260	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g301200
SBS	Chr4	36505686	G-A	Hetero	INTERGENIC
SBS	Chr5	4920914	G-A	Hetero	INTRON
SBS	Chr6	2982330	A-C	Homo	INTERGENIC
SBS	Chr7	13134328	G-A	Hetero	INTERGENIC
SBS	Chr7	14968645	G-C	Hetero	INTERGENIC
SBS	Chr7	17345800	T-A	Hetero	INTERGENIC
SBS	Chr7	18944248	C-T	Hetero	INTERGENIC
SBS	Chr7	25445823	A-G	Hetero	INTERGENIC
SBS	Chr8	3357118	T-C	Homo	INTRON
SBS	Chr8	7089818	A-G	Homo	INTERGENIC
SBS	Chr8	8108697	T-A	Homo	INTERGENIC
SBS	Chr8	8108698	T-A	Homo	INTERGENIC
SBS	Chr8	19572559	T-A	Hetero	INTERGENIC
SBS	Chr8	28926383	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	4676564	C-T	Hetero	INTERGENIC
SBS	Chr9	5440710	A-T	Homo	INTERGENIC
SBS	Chr9	5587070	C-T	Hetero	INTRON
SBS	Chr9	6865631	A-T	Homo	INTERGENIC
SBS	Chr10	3380825	C-T	Hetero	INTERGENIC
SBS	Chr10	3938844	C-G	Hetero	INTRON
SBS	Chr10	10626376	G-A	Hetero	INTERGENIC
SBS	Chr10	11250954	A-T	Hetero	INTERGENIC
SBS	Chr10	11326138	A-G	Hetero	INTERGENIC
SBS	Chr10	20781713	T-A	Hetero	INTERGENIC
SBS	Chr11	13434997	C-T	Hetero	INTERGENIC
SBS	Chr11	14284288	C-G	Hetero	INTERGENIC
SBS	Chr11	16285221	A-T	Hetero	INTERGENIC
SBS	Chr11	24894212	C-A	Homo	INTERGENIC
SBS	Chr11	27369453	G-A	Hetero	INTERGENIC
SBS	Chr12	3705588	A-G	Homo	INTERGENIC
SBS	Chr12	15136796	G-T	Hetero	INTERGENIC
SBS	Chr12	18863206	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	307583	307600	17
Deletion	Chr7	2396006	2396015	9
Deletion	Chr7	2972388	2972394	6
Deletion	Chr5	3272063	3272065	2
Deletion	Chr2	5053029	5053030	1
Deletion	Chr3	5087900	5087901	1
Deletion	Chr4	5997001	6072000	74999	3
Deletion	Chr9	6752945	6752948	3
Deletion	Chr10	6950401	6950405	4	OsKitaake10g046500
Deletion	Chr9	8835794	8835795	1
Deletion	Chr9	8917357	8917360	3
Deletion	Chr1	13097918	13097922	4
Deletion	Chr5	18893899	18893900	1	OsKitaake05g147600
Deletion	Chr2	23216469	23216470	1
Deletion	Chr8	24321413	24321418	5
Deletion	Chr8	27963528	27963543	15
Deletion	Chr2	33421007	33421016	9
Deletion	Chr1	44084210	44084212	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5999644	6366448	OsKitaake04g032100
Inversion	Chr6	9087981	9129671	OsKitaake06g109200
Inversion	Chr6	9087984	9129686	OsKitaake06g109200
Inversion	Chr10	13872586	13943089	OsKitaake10g084800
Inversion	Chr10	13874147	13943088	OsKitaake10g084800
Inversion	Chr9	20239429	20335928	OsKitaake09g170900
Inversion	Chr9	20239445	20335943	OsKitaake09g170900
Inversion	Chr4	29002932	29018046	OsKitaake04g219000
Inversion	Chr4	29004189	29641518
Inversion	Chr4	29004591	29641523
Inversion	Chr4	29017814	29512187	OsKitaake04g226300
Inversion	Chr4	29301025	29512193	OsKitaake04g226300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes