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| Mutant Information |
|---|
| Mutant Name | FN2139-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2139-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8167999 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 15664401 | C-G | Homo | INTRON | |
| SBS | Chr1 | 26536899 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 40946095 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 2116441 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 7125972 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 4276057 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 1456185 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10943778 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 11057359 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11936095 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 5103763 | G-A | Homo | INTRON | |
| SBS | Chr5 | 5827643 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 27752719 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 3668018 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 8924531 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21712541 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28590730 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g262600 |
| SBS | Chr8 | 27394227 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 20569701 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 22316910 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 5664171 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 7778421 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 11044660 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13455418 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13794505 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 16751605 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 3830637 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9368648 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 9400291 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9438998 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 10378060 | T-C | Homo | INTRON | |
| SBS | Chr12 | 24298845 | C-T | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2196625 | 2196628 | 3 | |
| Deletion | Chr11 | 4030508 | 4030510 | 2 | |
| Deletion | Chr2 | 4888832 | 4888834 | 2 | |
| Deletion | Chr5 | 6403063 | 6403065 | 2 | |
| Deletion | Chr6 | 6617297 | 6617307 | 10 | |
| Deletion | Chr6 | 8498597 | 8498605 | 8 | |
| Deletion | Chr3 | 14014128 | 14014133 | 5 | |
| Deletion | Chr2 | 18073421 | 18073422 | 1 | |
| Deletion | Chr2 | 21719700 | 21719701 | 1 | |
| Deletion | Chr7 | 24722074 | 24722080 | 6 | OsKitaake07g220400 |
| Deletion | Chr12 | 25169964 | 25169969 | 5 | OsKitaake12g204300 |
| Deletion | Chr11 | 26079303 | 26079305 | 2 | |
| Deletion | Chr7 | 26682205 | 26682208 | 3 | |
| Deletion | Chr6 | 26938364 | 26938366 | 2 | |
| Deletion | Chr2 | 31525455 | 31525459 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 16647037 | 16647040 | 2 | |
| Insertion | Chr8 | 2083695 | 2083700 | 4 | |
| Insertion | Chr9 | 5270087 | 5270090 | 2 |