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Mutant Information

Mutant Name	FN2140-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2140-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14403021 G-A Hetero INTERGENIC
SBS Chr1 20143090 T-G Homo INTERGENIC
SBS Chr1 33115889 C-T Homo INTERGENIC
SBS Chr1 41302550 C-T Homo INTERGENIC
SBS Chr2 2348056 T-C Homo INTERGENIC
SBS Chr2 6220326 C-T Homo INTRON
SBS Chr2 7189325 A-C Hetero UTR_3_PRIME
SBS Chr2 9585198 T-C Hetero INTERGENIC
SBS Chr2 9585199 G-A Hetero INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr2 24041441 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g236400
SBS Chr2 24943208 C-G Hetero INTERGENIC
SBS Chr2 25076842 G-A Hetero INTERGENIC
SBS Chr2 25799639 C-G Hetero INTERGENIC
SBS Chr3 15091872 C-T Homo INTRON
SBS Chr3 17882628 T-G Hetero INTERGENIC
SBS Chr3 19192387 T-C Hetero INTERGENIC
SBS Chr3 19214703 G-C Hetero INTERGENIC
SBS Chr3 20233957 C-T Hetero INTERGENIC
SBS Chr3 20234517 G-A Hetero INTERGENIC
SBS Chr3 22694102 T-G Hetero SYNONYMOUS_CODING
SBS Chr3 23992730 A-C Hetero INTERGENIC
SBS Chr3 26306382 G-C Hetero INTERGENIC
SBS Chr4 1849807 G-C Hetero UTR_3_PRIME
SBS Chr4 1897756 G-A Hetero INTERGENIC
SBS Chr4 1897757 T-A Hetero INTERGENIC
SBS Chr4 9273833 G-A Homo INTERGENIC
SBS Chr4 14161688 C-T Hetero INTERGENIC
SBS Chr4 15937852 G-A Hetero INTERGENIC
SBS Chr4 16252063 T-G Homo INTERGENIC
SBS Chr4 18847826 G-A Hetero INTERGENIC
SBS Chr5 15589851 T-G Hetero INTERGENIC
SBS Chr5 22125397 G-A Hetero INTERGENIC
SBS Chr5 22347419 C-A Hetero INTERGENIC
SBS Chr5 27954761 A-G Hetero INTRON
SBS Chr6 1049584 G-T Homo INTERGENIC
SBS Chr6 6688842 T-C Hetero INTERGENIC
SBS Chr6 24922218 G-T Hetero INTERGENIC
SBS Chr6 29271373 C-T Hetero INTERGENIC
SBS Chr6 30146467 G-A Hetero SPLICE_SITE_REGION
SBS Chr7 1484701 C-T Hetero INTERGENIC
SBS Chr7 17485584 C-T Hetero INTERGENIC
SBS Chr7 21676375 A-G Hetero INTERGENIC
SBS Chr7 22698247 T-G Hetero INTRON
SBS Chr7 26744476 G-A Hetero INTERGENIC
SBS Chr8 1314893 A-T Hetero INTERGENIC
SBS Chr8 9233829 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g084200
SBS Chr8 27137452 T-C Hetero INTERGENIC
SBS Chr8 27137453 A-T Hetero INTERGENIC
SBS Chr9 20760 C-T Hetero INTERGENIC
SBS Chr9 2733126 G-A Hetero INTERGENIC
SBS Chr9 4577601 A-G Hetero INTERGENIC
SBS Chr11 28807299 T-A Hetero INTERGENIC
SBS Chr12 2009707 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g031500
SBS Chr12 3251922 A-C Homo INTERGENIC
SBS Chr12 7167493 G-T Hetero INTERGENIC
SBS Chr12 23910558 T-C Hetero INTERGENIC
SBS Chr12 25639218 G-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3027402 3027415 13
Deletion Chr6 4062591 4062595 4 OsKitaake06g057200
Deletion Chr5 6693593 6693594 1
Deletion Chr2 7149726 7149745 19
Deletion Chr7 7599545 7599546 1
Deletion Chr8 8056104 8056108 4
Deletion Chr2 8905483 8905489 6
Deletion Chr12 13178001 13199000 20999 8
Deletion Chr6 16201659 16201667 8
Deletion Chr11 16381028 16381035 7
Deletion Chr10 19708862 19708872 10 OsKitaake10g145900
Deletion Chr2 25356372 25356374 2
Deletion Chr6 25574785 25574791 6 OsKitaake06g227300
Deletion Chr3 26898319 26898321 2
Deletion Chr4 29631001 29676000 44999 6
Deletion Chr1 42433698 42433719 21

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10343054 10343057 2
Insertion Chr9 10397280 10397283 2
Insertion Chr9 12736075 12736078 2
Insertion Chr9 20986877 20986880 2
Insertion Chr10 18686981 18686984 2
Insertion Chr11 13914383 13914386 2
Insertion Chr6 29136797 29136800 2 OsKitaake06g268803

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14403021	G-A	Hetero	INTERGENIC
SBS	Chr1	20143090	T-G	Homo	INTERGENIC
SBS	Chr1	33115889	C-T	Homo	INTERGENIC
SBS	Chr1	41302550	C-T	Homo	INTERGENIC
SBS	Chr2	2348056	T-C	Homo	INTERGENIC
SBS	Chr2	6220326	C-T	Homo	INTRON
SBS	Chr2	7189325	A-C	Hetero	UTR_3_PRIME
SBS	Chr2	9585198	T-C	Hetero	INTERGENIC
SBS	Chr2	9585199	G-A	Hetero	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr2	24041441	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g236400
SBS	Chr2	24943208	C-G	Hetero	INTERGENIC
SBS	Chr2	25076842	G-A	Hetero	INTERGENIC
SBS	Chr2	25799639	C-G	Hetero	INTERGENIC
SBS	Chr3	15091872	C-T	Homo	INTRON
SBS	Chr3	17882628	T-G	Hetero	INTERGENIC
SBS	Chr3	19192387	T-C	Hetero	INTERGENIC
SBS	Chr3	19214703	G-C	Hetero	INTERGENIC
SBS	Chr3	20233957	C-T	Hetero	INTERGENIC
SBS	Chr3	20234517	G-A	Hetero	INTERGENIC
SBS	Chr3	22694102	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	23992730	A-C	Hetero	INTERGENIC
SBS	Chr3	26306382	G-C	Hetero	INTERGENIC
SBS	Chr4	1849807	G-C	Hetero	UTR_3_PRIME
SBS	Chr4	1897756	G-A	Hetero	INTERGENIC
SBS	Chr4	1897757	T-A	Hetero	INTERGENIC
SBS	Chr4	9273833	G-A	Homo	INTERGENIC
SBS	Chr4	14161688	C-T	Hetero	INTERGENIC
SBS	Chr4	15937852	G-A	Hetero	INTERGENIC
SBS	Chr4	16252063	T-G	Homo	INTERGENIC
SBS	Chr4	18847826	G-A	Hetero	INTERGENIC
SBS	Chr5	15589851	T-G	Hetero	INTERGENIC
SBS	Chr5	22125397	G-A	Hetero	INTERGENIC
SBS	Chr5	22347419	C-A	Hetero	INTERGENIC
SBS	Chr5	27954761	A-G	Hetero	INTRON
SBS	Chr6	1049584	G-T	Homo	INTERGENIC
SBS	Chr6	6688842	T-C	Hetero	INTERGENIC
SBS	Chr6	24922218	G-T	Hetero	INTERGENIC
SBS	Chr6	29271373	C-T	Hetero	INTERGENIC
SBS	Chr6	30146467	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr7	1484701	C-T	Hetero	INTERGENIC
SBS	Chr7	17485584	C-T	Hetero	INTERGENIC
SBS	Chr7	21676375	A-G	Hetero	INTERGENIC
SBS	Chr7	22698247	T-G	Hetero	INTRON
SBS	Chr7	26744476	G-A	Hetero	INTERGENIC
SBS	Chr8	1314893	A-T	Hetero	INTERGENIC
SBS	Chr8	9233829	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g084200
SBS	Chr8	27137452	T-C	Hetero	INTERGENIC
SBS	Chr8	27137453	A-T	Hetero	INTERGENIC
SBS	Chr9	20760	C-T	Hetero	INTERGENIC
SBS	Chr9	2733126	G-A	Hetero	INTERGENIC
SBS	Chr9	4577601	A-G	Hetero	INTERGENIC
SBS	Chr11	28807299	T-A	Hetero	INTERGENIC
SBS	Chr12	2009707	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g031500
SBS	Chr12	3251922	A-C	Homo	INTERGENIC
SBS	Chr12	7167493	G-T	Hetero	INTERGENIC
SBS	Chr12	23910558	T-C	Hetero	INTERGENIC
SBS	Chr12	25639218	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3027402	3027415	13
Deletion	Chr6	4062591	4062595	4	OsKitaake06g057200
Deletion	Chr5	6693593	6693594	1
Deletion	Chr2	7149726	7149745	19
Deletion	Chr7	7599545	7599546	1
Deletion	Chr8	8056104	8056108	4
Deletion	Chr2	8905483	8905489	6
Deletion	Chr12	13178001	13199000	20999	8
Deletion	Chr6	16201659	16201667	8
Deletion	Chr11	16381028	16381035	7
Deletion	Chr10	19708862	19708872	10	OsKitaake10g145900
Deletion	Chr2	25356372	25356374	2
Deletion	Chr6	25574785	25574791	6	OsKitaake06g227300
Deletion	Chr3	26898319	26898321	2
Deletion	Chr4	29631001	29676000	44999	6
Deletion	Chr1	42433698	42433719	21

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes