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Mutant Information

Mutant Name	FN2146-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2146-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12360552 T-C Hetero INTERGENIC
SBS Chr1 16545189 C-T Hetero INTERGENIC
SBS Chr1 16654538 A-G Hetero INTERGENIC
SBS Chr1 38077651 A-G Hetero INTERGENIC
SBS Chr1 42864936 T-C Hetero INTERGENIC
SBS Chr2 867310 A-G Hetero INTERGENIC
SBS Chr2 10830943 T-A Hetero INTERGENIC
SBS Chr2 17965854 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g178800
SBS Chr2 20096031 A-T Hetero INTERGENIC
SBS Chr2 20096032 A-T Hetero INTERGENIC
SBS Chr3 4775818 T-C Hetero INTERGENIC
SBS Chr3 4775819 C-A Hetero INTERGENIC
SBS Chr3 5312286 T-C Hetero INTERGENIC
SBS Chr3 19326523 G-A Hetero INTERGENIC
SBS Chr3 19718256 G-A Homo INTERGENIC
SBS Chr3 32590145 G-A Hetero INTERGENIC
SBS Chr4 11367118 T-C Hetero INTERGENIC
SBS Chr4 14131575 A-T Hetero INTERGENIC
SBS Chr4 14131576 G-T Hetero INTERGENIC
SBS Chr4 14230528 A-T Hetero INTERGENIC
SBS Chr4 24430106 G-A Hetero INTERGENIC
SBS Chr4 26830767 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g194200
SBS Chr4 29547023 A-G Hetero INTERGENIC
SBS Chr4 35750953 A-G Hetero INTERGENIC
SBS Chr5 8667043 A-G Hetero INTERGENIC
SBS Chr5 11954145 G-C Hetero INTERGENIC
SBS Chr5 12898155 T-A Homo INTERGENIC
SBS Chr5 20884586 C-G Hetero INTERGENIC
SBS Chr5 22001265 T-A Hetero INTERGENIC
SBS Chr5 22783770 T-C Hetero INTERGENIC
SBS Chr6 9398297 C-T Hetero INTERGENIC
SBS Chr6 26129831 C-G Hetero INTRON
SBS Chr6 27309659 G-A Hetero INTRON
SBS Chr7 7332666 G-C Hetero INTERGENIC
SBS Chr7 23879361 A-G Hetero INTERGENIC
SBS Chr8 1945734 T-A Homo INTERGENIC
SBS Chr8 3658755 G-A Hetero INTERGENIC
SBS Chr8 8389083 A-G Hetero UTR_3_PRIME
SBS Chr8 15561838 T-C Homo INTERGENIC
SBS Chr8 15768612 C-G Hetero INTERGENIC
SBS Chr8 22880148 C-A Homo INTERGENIC
SBS Chr9 6831047 G-A Hetero INTERGENIC
SBS Chr9 8758981 A-C Hetero INTERGENIC
SBS Chr9 11186962 G-A Hetero INTERGENIC
SBS Chr9 14468289 G-A Hetero INTERGENIC
SBS Chr9 17636513 T-A Hetero INTERGENIC
SBS Chr10 4741470 G-C Homo INTERGENIC
SBS Chr10 6566042 C-T Hetero INTERGENIC
SBS Chr10 7817528 G-A Hetero INTERGENIC
SBS Chr10 23784065 G-A Hetero INTERGENIC
SBS Chr11 3316554 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g046100
SBS Chr11 7805251 G-C Hetero INTERGENIC
SBS Chr11 9004300 A-G Hetero INTERGENIC
SBS Chr11 11204481 T-C Hetero INTERGENIC
SBS Chr11 16067246 A-G Hetero INTERGENIC
SBS Chr11 23577077 C-T Hetero INTRON
SBS Chr12 3557856 G-A Hetero INTERGENIC
SBS Chr12 6922481 G-A Hetero INTERGENIC
SBS Chr12 11748000 T-A Homo INTERGENIC
SBS Chr12 14683435 A-G Hetero INTERGENIC
SBS Chr12 15101719 T-G Hetero INTERGENIC
SBS Chr12 23852055 C-G Hetero INTERGENIC
SBS Chr12 26110765 G-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 5332849 5332850 1
Deletion Chr11 6922653 6922738 85
Deletion Chr6 8546001 8580000 33999 2
Deletion Chr4 10782735 10782737 2
Deletion Chr8 10955237 10955247 10
Deletion Chr3 11296744 11296754 10
Deletion Chr12 14229930 14229947 17
Deletion Chr12 15217144 15217149 5
Deletion Chr5 18183001 18192000 8999 OsKitaake05g141300
Deletion Chr7 18364330 18364335 5
Deletion Chr10 20670094 20670113 19
Deletion Chr8 21097001 21105000 7999
Deletion Chr6 23683539 23683541 2
Deletion Chr3 28842563 28842566 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 26239827 26239832 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 20989758 21097997

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8885317 Chr6 8580755 OsKitaake06g106100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12360552	T-C	Hetero	INTERGENIC
SBS	Chr1	16545189	C-T	Hetero	INTERGENIC
SBS	Chr1	16654538	A-G	Hetero	INTERGENIC
SBS	Chr1	38077651	A-G	Hetero	INTERGENIC
SBS	Chr1	42864936	T-C	Hetero	INTERGENIC
SBS	Chr2	867310	A-G	Hetero	INTERGENIC
SBS	Chr2	10830943	T-A	Hetero	INTERGENIC
SBS	Chr2	17965854	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g178800
SBS	Chr2	20096031	A-T	Hetero	INTERGENIC
SBS	Chr2	20096032	A-T	Hetero	INTERGENIC
SBS	Chr3	4775818	T-C	Hetero	INTERGENIC
SBS	Chr3	4775819	C-A	Hetero	INTERGENIC
SBS	Chr3	5312286	T-C	Hetero	INTERGENIC
SBS	Chr3	19326523	G-A	Hetero	INTERGENIC
SBS	Chr3	19718256	G-A	Homo	INTERGENIC
SBS	Chr3	32590145	G-A	Hetero	INTERGENIC
SBS	Chr4	11367118	T-C	Hetero	INTERGENIC
SBS	Chr4	14131575	A-T	Hetero	INTERGENIC
SBS	Chr4	14131576	G-T	Hetero	INTERGENIC
SBS	Chr4	14230528	A-T	Hetero	INTERGENIC
SBS	Chr4	24430106	G-A	Hetero	INTERGENIC
SBS	Chr4	26830767	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g194200
SBS	Chr4	29547023	A-G	Hetero	INTERGENIC
SBS	Chr4	35750953	A-G	Hetero	INTERGENIC
SBS	Chr5	8667043	A-G	Hetero	INTERGENIC
SBS	Chr5	11954145	G-C	Hetero	INTERGENIC
SBS	Chr5	12898155	T-A	Homo	INTERGENIC
SBS	Chr5	20884586	C-G	Hetero	INTERGENIC
SBS	Chr5	22001265	T-A	Hetero	INTERGENIC
SBS	Chr5	22783770	T-C	Hetero	INTERGENIC
SBS	Chr6	9398297	C-T	Hetero	INTERGENIC
SBS	Chr6	26129831	C-G	Hetero	INTRON
SBS	Chr6	27309659	G-A	Hetero	INTRON
SBS	Chr7	7332666	G-C	Hetero	INTERGENIC
SBS	Chr7	23879361	A-G	Hetero	INTERGENIC
SBS	Chr8	1945734	T-A	Homo	INTERGENIC
SBS	Chr8	3658755	G-A	Hetero	INTERGENIC
SBS	Chr8	8389083	A-G	Hetero	UTR_3_PRIME
SBS	Chr8	15561838	T-C	Homo	INTERGENIC
SBS	Chr8	15768612	C-G	Hetero	INTERGENIC
SBS	Chr8	22880148	C-A	Homo	INTERGENIC
SBS	Chr9	6831047	G-A	Hetero	INTERGENIC
SBS	Chr9	8758981	A-C	Hetero	INTERGENIC
SBS	Chr9	11186962	G-A	Hetero	INTERGENIC
SBS	Chr9	14468289	G-A	Hetero	INTERGENIC
SBS	Chr9	17636513	T-A	Hetero	INTERGENIC
SBS	Chr10	4741470	G-C	Homo	INTERGENIC
SBS	Chr10	6566042	C-T	Hetero	INTERGENIC
SBS	Chr10	7817528	G-A	Hetero	INTERGENIC
SBS	Chr10	23784065	G-A	Hetero	INTERGENIC
SBS	Chr11	3316554	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g046100
SBS	Chr11	7805251	G-C	Hetero	INTERGENIC
SBS	Chr11	9004300	A-G	Hetero	INTERGENIC
SBS	Chr11	11204481	T-C	Hetero	INTERGENIC
SBS	Chr11	16067246	A-G	Hetero	INTERGENIC
SBS	Chr11	23577077	C-T	Hetero	INTRON
SBS	Chr12	3557856	G-A	Hetero	INTERGENIC
SBS	Chr12	6922481	G-A	Hetero	INTERGENIC
SBS	Chr12	11748000	T-A	Homo	INTERGENIC
SBS	Chr12	14683435	A-G	Hetero	INTERGENIC
SBS	Chr12	15101719	T-G	Hetero	INTERGENIC
SBS	Chr12	23852055	C-G	Hetero	INTERGENIC
SBS	Chr12	26110765	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	5332849	5332850	1
Deletion	Chr11	6922653	6922738	85
Deletion	Chr6	8546001	8580000	33999	2
Deletion	Chr4	10782735	10782737	2
Deletion	Chr8	10955237	10955247	10
Deletion	Chr3	11296744	11296754	10
Deletion	Chr12	14229930	14229947	17
Deletion	Chr12	15217144	15217149	5
Deletion	Chr5	18183001	18192000	8999	OsKitaake05g141300
Deletion	Chr7	18364330	18364335	5
Deletion	Chr10	20670094	20670113	19
Deletion	Chr8	21097001	21105000	7999
Deletion	Chr6	23683539	23683541	2
Deletion	Chr3	28842563	28842566	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	20989758	21097997

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes