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| Mutant Information |
|---|
| Mutant Name | FN2147-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2147-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8274091 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 8769966 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 26533268 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37809214 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41275809 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25492186 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 34608077 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 3960856 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4159961 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27960730 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 29402726 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 29402727 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 34598509 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19662064 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 34495037 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34495038 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20220773 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 1142516 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 30174004 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 14408028 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14705059 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16406651 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 24620418 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 24620419 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 26052396 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13361005 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 22163533 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 25112732 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 1958654 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 8740797 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14233342 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16586588 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 21808884 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 8612589 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 19462031 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24525461 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25468513 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6255791 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6933341 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 18804974 | A-G | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 7548001 | 7572000 | 23999 | OsKitaake09g042900 |
| Deletion | Chr12 | 7584050 | 7584202 | 152 | |
| Deletion | Chr7 | 11984659 | 11984660 | 1 | |
| Deletion | Chr12 | 12594001 | 12621000 | 26999 | 5 |
| Deletion | Chr6 | 19735131 | 19735499 | 368 | |
| Deletion | Chr4 | 23023974 | 23023975 | 1 | |
| Deletion | Chr1 | 29492387 | 29492388 | 1 | OsKitaake01g289000 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 19872410 | 19872414 | 3 |
Inversions: 8
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 8787900 | 9309442 | OsKitaake08g085101 |
| Inversion | Chr8 | 19822601 | 20328244 | OsKitaake08g146100 |
| Inversion | Chr6 | 21290763 | 22000598 | OsKitaake06g188700 |
| Inversion | Chr6 | 21290764 | 22000606 | OsKitaake06g188700 |
| Inversion | Chr7 | 23209166 | 23551327 | |
| Inversion | Chr7 | 23209181 | 23551326 | |
| Inversion | Chr2 | 27512659 | 28173575 | 2 |
| Inversion | Chr2 | 28173574 | 28235786 | OsKitaake02g284200 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 8427448 | Chr4 | 18859254 | |
| Translocation | Chr8 | 19578423 | Chr1 | 29007118 | |
| Translocation | Chr8 | 20328261 | Chr1 | 29007598 |