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Mutant Information

Mutant Name	FN2151-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2151-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5496186 G-A Hetero INTERGENIC
SBS Chr1 7198102 A-G Hetero INTRON
SBS Chr1 9537342 T-A Hetero INTRON
SBS Chr1 10440856 G-T Hetero UTR_5_PRIME
SBS Chr1 13202201 T-C Hetero INTERGENIC
SBS Chr1 30029342 G-A Homo INTERGENIC
SBS Chr2 2366475 T-C Hetero INTERGENIC
SBS Chr2 19627863 G-T Hetero INTERGENIC
SBS Chr3 3134238 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g044000
SBS Chr3 36870298 T-C Hetero INTERGENIC
SBS Chr4 4809463 G-A Hetero INTERGENIC
SBS Chr4 8147851 G-C Hetero INTERGENIC
SBS Chr4 9034431 G-T Hetero INTERGENIC
SBS Chr4 12150137 G-T Homo INTERGENIC
SBS Chr4 18061339 G-A Hetero INTERGENIC
SBS Chr4 18975475 C-T Hetero INTRON
SBS Chr4 20671855 G-A Hetero INTERGENIC
SBS Chr4 25496420 A-C Homo START_LOST OsKitaake04g175300
SBS Chr4 29650883 T-C Hetero INTERGENIC
SBS Chr5 6830338 G-A Hetero INTERGENIC
SBS Chr5 12450938 G-A Hetero INTERGENIC
SBS Chr5 21123355 G-A Homo INTRON
SBS Chr6 8749962 G-A Hetero INTERGENIC
SBS Chr6 14849510 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 19530439 C-A Hetero INTERGENIC
SBS Chr6 19530442 C-T Hetero INTERGENIC
SBS Chr8 20265183 A-G Hetero UTR_3_PRIME
SBS Chr8 21916810 C-T Hetero INTRON
SBS Chr9 3682019 T-C Hetero INTERGENIC
SBS Chr9 4852799 C-T Hetero INTERGENIC
SBS Chr9 6973456 A-T Hetero INTRON
SBS Chr9 21065514 G-A Hetero INTERGENIC
SBS Chr11 11642343 A-T Homo INTERGENIC
SBS Chr11 24004598 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g193000
SBS Chr12 12678653 C-G Hetero INTERGENIC
SBS Chr12 21016345 A-G Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 671740 671747 7
Deletion Chr2 2085797 2085807 10
Deletion Chr4 3525738 3525746 8
Deletion Chr4 8477208 8477210 2
Deletion Chr5 9302001 9350000 47999 3
Deletion Chr1 15228333 15228335 2
Deletion Chr6 17712505 17712513 8
Deletion Chr6 22262870 22262882 12
Deletion Chr4 28695593 28695602 9
Deletion Chr4 33772396 33772398 2
Deletion Chr1 34297001 34332000 34999 8
Deletion Chr1 34453001 34512000 58999 9
Deletion Chr1 34581001 34660000 78999 19
Deletion Chr1 37646287 37646288 1 OsKitaake01g401700
Deletion Chr1 37680309 37680329 20

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 8970534 9382458 OsKitaake01g120200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 3401368 Chr9 6966970 OsKitaake11g047100
Translocation Chr11 3401381 Chr9 6974297 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5496186	G-A	Hetero	INTERGENIC
SBS	Chr1	7198102	A-G	Hetero	INTRON
SBS	Chr1	9537342	T-A	Hetero	INTRON
SBS	Chr1	10440856	G-T	Hetero	UTR_5_PRIME
SBS	Chr1	13202201	T-C	Hetero	INTERGENIC
SBS	Chr1	30029342	G-A	Homo	INTERGENIC
SBS	Chr2	2366475	T-C	Hetero	INTERGENIC
SBS	Chr2	19627863	G-T	Hetero	INTERGENIC
SBS	Chr3	3134238	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g044000
SBS	Chr3	36870298	T-C	Hetero	INTERGENIC
SBS	Chr4	4809463	G-A	Hetero	INTERGENIC
SBS	Chr4	8147851	G-C	Hetero	INTERGENIC
SBS	Chr4	9034431	G-T	Hetero	INTERGENIC
SBS	Chr4	12150137	G-T	Homo	INTERGENIC
SBS	Chr4	18061339	G-A	Hetero	INTERGENIC
SBS	Chr4	18975475	C-T	Hetero	INTRON
SBS	Chr4	20671855	G-A	Hetero	INTERGENIC
SBS	Chr4	25496420	A-C	Homo	START_LOST	OsKitaake04g175300
SBS	Chr4	29650883	T-C	Hetero	INTERGENIC
SBS	Chr5	6830338	G-A	Hetero	INTERGENIC
SBS	Chr5	12450938	G-A	Hetero	INTERGENIC
SBS	Chr5	21123355	G-A	Homo	INTRON
SBS	Chr6	8749962	G-A	Hetero	INTERGENIC
SBS	Chr6	14849510	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	19530439	C-A	Hetero	INTERGENIC
SBS	Chr6	19530442	C-T	Hetero	INTERGENIC
SBS	Chr8	20265183	A-G	Hetero	UTR_3_PRIME
SBS	Chr8	21916810	C-T	Hetero	INTRON
SBS	Chr9	3682019	T-C	Hetero	INTERGENIC
SBS	Chr9	4852799	C-T	Hetero	INTERGENIC
SBS	Chr9	6973456	A-T	Hetero	INTRON
SBS	Chr9	21065514	G-A	Hetero	INTERGENIC
SBS	Chr11	11642343	A-T	Homo	INTERGENIC
SBS	Chr11	24004598	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g193000
SBS	Chr12	12678653	C-G	Hetero	INTERGENIC
SBS	Chr12	21016345	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	671740	671747	7
Deletion	Chr2	2085797	2085807	10
Deletion	Chr4	3525738	3525746	8
Deletion	Chr4	8477208	8477210	2
Deletion	Chr5	9302001	9350000	47999	3
Deletion	Chr1	15228333	15228335	2
Deletion	Chr6	17712505	17712513	8
Deletion	Chr6	22262870	22262882	12
Deletion	Chr4	28695593	28695602	9
Deletion	Chr4	33772396	33772398	2
Deletion	Chr1	34297001	34332000	34999	8
Deletion	Chr1	34453001	34512000	58999	9
Deletion	Chr1	34581001	34660000	78999	19
Deletion	Chr1	37646287	37646288	1	OsKitaake01g401700
Deletion	Chr1	37680309	37680329	20

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	8970534	9382458	OsKitaake01g120200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes