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| Mutant Information |
|---|
| Mutant Name | FN2153-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2153-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15316607 | T-C | Homo | INTRON | |
| SBS | Chr1 | 41516384 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5446985 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 36446924 | C-A | Homo | INTRON | |
| SBS | Chr4 | 295341 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 7872064 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 2193903 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 29230505 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 27839658 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 10649451 | T-G | Homo | INTRON | |
| SBS | Chr7 | 18864556 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19242243 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g156100 |
| SBS | Chr7 | 21653141 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g181200 |
| SBS | Chr7 | 22266170 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27031731 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 5903634 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8522410 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 9599353 | G-A | Homo | INTRON | |
| SBS | Chr9 | 16112952 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1100014 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 6040366 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 1456633 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8026079 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 8300252 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9986511 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 11289827 | G-T | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 71578 | 71593 | 15 | |
| Deletion | Chr2 | 5178502 | 5178505 | 3 | |
| Deletion | Chr4 | 6457001 | 6476000 | 18999 | |
| Deletion | Chr5 | 6731649 | 6731651 | 2 | |
| Deletion | Chr5 | 8690001 | 8707000 | 16999 | |
| Deletion | Chr1 | 10255001 | 10268000 | 12999 | |
| Deletion | Chr2 | 13277001 | 13293000 | 15999 | |
| Deletion | Chr10 | 15865507 | 15865828 | 321 | OsKitaake10g103600 |
| Deletion | Chr5 | 17431001 | 17446000 | 14999 | |
| Deletion | Chr11 | 18093947 | 18094315 | 368 | |
| Deletion | Chr7 | 21392001 | 21406000 | 13999 | |
| Deletion | Chr5 | 22920001 | 22945000 | 24999 | 3 |
| Deletion | Chr8 | 23179485 | 23179595 | 110 | |
| Deletion | Chr5 | 23352728 | 23353144 | 416 | |
| Deletion | Chr1 | 27726001 | 27741000 | 14999 | |
| Deletion | Chr3 | 28704434 | 28704435 | 1 | |
| Deletion | Chr7 | 29424001 | 29434000 | 9999 | |
| Deletion | Chr4 | 29986001 | 29994000 | 7999 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 24954 | 24957 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 2463451 | 2583631 | OsKitaake05g028100 |
| Inversion | Chr5 | 2463458 | 2583639 | OsKitaake05g028100 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 13137991 | Chr2 | 4736427 | OsKitaake02g065500 |
| Translocation | Chr12 | 13138272 | Chr2 | 4736429 | OsKitaake02g065500 |
| Translocation | Chr7 | 27004938 | Chr3 | 25565606 |