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Mutant Information

Mutant Name	FN2162-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2162-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 16

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15989181 G-T Hetero INTERGENIC
SBS Chr2 2871163 G-A Homo INTRON
SBS Chr2 19999612 C-T Hetero INTERGENIC
SBS Chr2 28204546 G-A Homo INTERGENIC
SBS Chr3 35181444 T-C Hetero INTERGENIC
SBS Chr4 15700771 C-T Hetero INTERGENIC
SBS Chr4 31614095 C-G Hetero INTERGENIC
SBS Chr4 34879837 A-G Hetero START_GAINED
SBS Chr5 25236794 T-C Hetero INTERGENIC
SBS Chr6 9618514 G-C Homo INTERGENIC
SBS Chr6 11315403 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g125400
SBS Chr6 19870777 T-C Homo INTERGENIC
SBS Chr7 18035476 A-C Hetero INTERGENIC
SBS Chr7 19919653 A-T Hetero UTR_3_PRIME
SBS Chr9 4581063 G-A Hetero INTERGENIC
SBS Chr9 6837377 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 836093 836094 1
Deletion Chr11 5228232 5228234 2
Deletion Chr6 8621001 8638000 16999
Deletion Chr4 12605986 12605987 1
Deletion Chr4 14422311 14422319 8
Deletion Chr2 16793932 16793937 5
Deletion Chr4 17551001 17747000 195999 15
Deletion Chr3 17723611 17723615 4
Deletion Chr2 17960288 17960289 1 OsKitaake02g178700
Deletion Chr4 18102001 18240000 137999 4
Deletion Chr7 21568304 21568309 5
Deletion Chr3 29320084 29320095 11 OsKitaake03g305500
Deletion Chr3 32816208 32816209 1
Deletion Chr2 35361276 35361286 10

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 2285858 2285863 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15989181	G-T	Hetero	INTERGENIC
SBS	Chr2	2871163	G-A	Homo	INTRON
SBS	Chr2	19999612	C-T	Hetero	INTERGENIC
SBS	Chr2	28204546	G-A	Homo	INTERGENIC
SBS	Chr3	35181444	T-C	Hetero	INTERGENIC
SBS	Chr4	15700771	C-T	Hetero	INTERGENIC
SBS	Chr4	31614095	C-G	Hetero	INTERGENIC
SBS	Chr4	34879837	A-G	Hetero	START_GAINED
SBS	Chr5	25236794	T-C	Hetero	INTERGENIC
SBS	Chr6	9618514	G-C	Homo	INTERGENIC
SBS	Chr6	11315403	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g125400
SBS	Chr6	19870777	T-C	Homo	INTERGENIC
SBS	Chr7	18035476	A-C	Hetero	INTERGENIC
SBS	Chr7	19919653	A-T	Hetero	UTR_3_PRIME
SBS	Chr9	4581063	G-A	Hetero	INTERGENIC
SBS	Chr9	6837377	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	836093	836094	1
Deletion	Chr11	5228232	5228234	2
Deletion	Chr6	8621001	8638000	16999
Deletion	Chr4	12605986	12605987	1
Deletion	Chr4	14422311	14422319	8
Deletion	Chr2	16793932	16793937	5
Deletion	Chr4	17551001	17747000	195999	15
Deletion	Chr3	17723611	17723615	4
Deletion	Chr2	17960288	17960289	1	OsKitaake02g178700
Deletion	Chr4	18102001	18240000	137999	4
Deletion	Chr7	21568304	21568309	5
Deletion	Chr3	29320084	29320095	11	OsKitaake03g305500
Deletion	Chr3	32816208	32816209	1
Deletion	Chr2	35361276	35361286	10

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes