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Mutant Information

Mutant Name	FN2163-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2163-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6743931 G-C Hetero INTERGENIC
SBS Chr1 13037819 G-A Hetero INTERGENIC
SBS Chr1 30967859 T-A Hetero INTERGENIC
SBS Chr1 38494510 G-T Homo INTERGENIC
SBS Chr2 4645618 G-A Hetero STOP_GAINED OsKitaake02g064200
SBS Chr2 4802316 A-T Hetero INTERGENIC
SBS Chr2 12730339 T-A Hetero INTERGENIC
SBS Chr2 34067903 T-C Hetero INTERGENIC
SBS Chr3 6638330 A-G Hetero INTERGENIC
SBS Chr4 2199429 A-G Hetero INTERGENIC
SBS Chr4 14074651 C-T Hetero INTERGENIC
SBS Chr4 17562829 C-A Hetero INTERGENIC
SBS Chr4 36135466 C-A Homo INTRON
SBS Chr5 21972202 G-A Hetero INTERGENIC
SBS Chr5 25107034 G-T Hetero INTERGENIC
SBS Chr6 4391796 A-G Homo INTERGENIC
SBS Chr7 24180381 T-C Homo INTERGENIC
SBS Chr7 28863520 T-C Homo INTERGENIC
SBS Chr8 16439377 C-A Homo INTERGENIC
SBS Chr10 6028666 C-A Homo INTERGENIC
SBS Chr10 14864565 C-G Homo INTERGENIC
SBS Chr12 14915176 A-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2265820 2265821 1
Deletion Chr7 4755241 4755242 1
Deletion Chr8 4886350 4886357 7
Deletion Chr10 7019056 7019064 8
Deletion Chr8 9484830 9484831 1
Deletion Chr11 11012871 11012881 10
Deletion Chr11 12456290 12456291 1
Deletion Chr1 12471590 12471591 1
Deletion Chr4 17150895 17150899 4
Deletion Chr12 18854768 18854777 9
Deletion Chr2 18959807 18959809 2
Deletion Chr7 22826816 22826817 1
Deletion Chr3 23706532 23706534 2
Deletion Chr2 35332312 35332322 10

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 25166565 25166568 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 12881326 12964832
Inversion Chr10 12881354 12964839

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 9431964 Chr3 6494929 OsKitaake10g054700
Translocation Chr10 9437867 Chr3 6494926
Translocation Chr6 15672784 Chr2 7245990 OsKitaake06g152800
Translocation Chr11 17938958 Chr3 33009359 2
Translocation Chr11 17939455 Chr1 3374105 OsKitaake11g140400
Translocation Chr3 33009758 Chr2 7247154 OsKitaake03g350900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6743931	G-C	Hetero	INTERGENIC
SBS	Chr1	13037819	G-A	Hetero	INTERGENIC
SBS	Chr1	30967859	T-A	Hetero	INTERGENIC
SBS	Chr1	38494510	G-T	Homo	INTERGENIC
SBS	Chr2	4645618	G-A	Hetero	STOP_GAINED	OsKitaake02g064200
SBS	Chr2	4802316	A-T	Hetero	INTERGENIC
SBS	Chr2	12730339	T-A	Hetero	INTERGENIC
SBS	Chr2	34067903	T-C	Hetero	INTERGENIC
SBS	Chr3	6638330	A-G	Hetero	INTERGENIC
SBS	Chr4	2199429	A-G	Hetero	INTERGENIC
SBS	Chr4	14074651	C-T	Hetero	INTERGENIC
SBS	Chr4	17562829	C-A	Hetero	INTERGENIC
SBS	Chr4	36135466	C-A	Homo	INTRON
SBS	Chr5	21972202	G-A	Hetero	INTERGENIC
SBS	Chr5	25107034	G-T	Hetero	INTERGENIC
SBS	Chr6	4391796	A-G	Homo	INTERGENIC
SBS	Chr7	24180381	T-C	Homo	INTERGENIC
SBS	Chr7	28863520	T-C	Homo	INTERGENIC
SBS	Chr8	16439377	C-A	Homo	INTERGENIC
SBS	Chr10	6028666	C-A	Homo	INTERGENIC
SBS	Chr10	14864565	C-G	Homo	INTERGENIC
SBS	Chr12	14915176	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2265820	2265821	1
Deletion	Chr7	4755241	4755242	1
Deletion	Chr8	4886350	4886357	7
Deletion	Chr10	7019056	7019064	8
Deletion	Chr8	9484830	9484831	1
Deletion	Chr11	11012871	11012881	10
Deletion	Chr11	12456290	12456291	1
Deletion	Chr1	12471590	12471591	1
Deletion	Chr4	17150895	17150899	4
Deletion	Chr12	18854768	18854777	9
Deletion	Chr2	18959807	18959809	2
Deletion	Chr7	22826816	22826817	1
Deletion	Chr3	23706532	23706534	2
Deletion	Chr2	35332312	35332322	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	12881326	12964832
Inversion	Chr10	12881354	12964839

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes