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Mutant Information

Mutant Name	FN2164-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2164-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1068449 T-C Hetero INTERGENIC
SBS Chr1 41501728 C-T Hetero INTERGENIC
SBS Chr2 19230429 G-A Homo SYNONYMOUS_CODING
SBS Chr2 30417390 A-C Homo INTERGENIC
SBS Chr2 33487611 G-A Homo INTERGENIC
SBS Chr2 35272366 G-A Hetero INTERGENIC
SBS Chr3 3191673 G-T Hetero INTRON
SBS Chr3 10439303 T-G Hetero INTERGENIC
SBS Chr3 10717387 G-T Homo UTR_3_PRIME
SBS Chr3 27994361 G-A Hetero INTERGENIC
SBS Chr4 715281 G-T Homo INTERGENIC
SBS Chr4 2673277 G-T Hetero INTERGENIC
SBS Chr4 10910080 G-A Homo INTERGENIC
SBS Chr4 10928835 G-T Hetero INTERGENIC
SBS Chr4 16347462 A-T Homo INTERGENIC
SBS Chr4 29038454 A-T Hetero INTERGENIC
SBS Chr4 30043810 T-G Hetero INTERGENIC
SBS Chr5 13202708 G-T Hetero INTERGENIC
SBS Chr5 30122998 G-A Hetero INTERGENIC
SBS Chr6 12491686 T-A Homo INTERGENIC
SBS Chr6 12491687 C-A Homo INTERGENIC
SBS Chr6 25718701 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g228803
SBS Chr6 27627313 A-C Hetero INTERGENIC
SBS Chr7 1702448 C-T Hetero INTRON
SBS Chr7 26177281 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g240000
SBS Chr7 28478427 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g271100
SBS Chr8 5176554 T-C Homo INTRON
SBS Chr8 12344944 C-T Hetero INTERGENIC
SBS Chr8 25740859 G-C Homo INTERGENIC
SBS Chr9 2896960 C-T Hetero INTERGENIC
SBS Chr9 13329437 C-T Hetero INTERGENIC
SBS Chr10 4627391 A-C Hetero INTERGENIC
SBS Chr10 5316523 C-T Homo SYNONYMOUS_CODING
SBS Chr10 17394648 A-T Hetero INTERGENIC
SBS Chr10 24001306 C-T Hetero INTERGENIC
SBS Chr11 1153979 C-A Hetero INTERGENIC
SBS Chr11 1153981 G-T Hetero INTERGENIC
SBS Chr11 15101861 A-C Homo INTERGENIC
SBS Chr11 15101863 T-C Homo INTERGENIC
SBS Chr11 24385621 G-A Homo INTERGENIC
SBS Chr11 25096756 C-T Homo INTERGENIC
SBS Chr12 10394872 G-A Homo INTERGENIC
SBS Chr12 20035224 G-C Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1662941 1662950 9 OsKitaake08g021400
Deletion Chr9 5253505 5253508 3
Deletion Chr6 5587720 5587737 17
Deletion Chr11 15442376 15442380 4
Deletion Chr4 17395026 17395027 1
Deletion Chr4 17681444 17681446 2
Deletion Chr4 17681460 17681488 28
Deletion Chr1 20388038 20388045 7
Deletion Chr12 22715221 22715230 9 OsKitaake12g179000
Deletion Chr5 22946001 23047000 100999 12

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 20109562 20109565 2
Insertion Chr11 17557096 17557100 3
Insertion Chr3 16743903 16743905 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 12325497 12348855 OsKitaake03g166200
Inversion Chr1 17662657 18460659 OsKitaake01g180150
Inversion Chr1 17662698 18460673 OsKitaake01g180150
Inversion Chr1 32464271 32466634 OsKitaake01g328800
Inversion Chr1 32464276 32466633 OsKitaake01g328800

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1069973 Chr7 3579515 OsKitaake07g045800
Translocation Chr8 1070770 Chr7 3579509 OsKitaake07g045800
Translocation Chr11 2081018 Chr6 20289687 OsKitaake11g030700
Translocation Chr11 2081019 Chr6 20285249 OsKitaake11g030700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1068449	T-C	Hetero	INTERGENIC
SBS	Chr1	41501728	C-T	Hetero	INTERGENIC
SBS	Chr2	19230429	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	30417390	A-C	Homo	INTERGENIC
SBS	Chr2	33487611	G-A	Homo	INTERGENIC
SBS	Chr2	35272366	G-A	Hetero	INTERGENIC
SBS	Chr3	3191673	G-T	Hetero	INTRON
SBS	Chr3	10439303	T-G	Hetero	INTERGENIC
SBS	Chr3	10717387	G-T	Homo	UTR_3_PRIME
SBS	Chr3	27994361	G-A	Hetero	INTERGENIC
SBS	Chr4	715281	G-T	Homo	INTERGENIC
SBS	Chr4	2673277	G-T	Hetero	INTERGENIC
SBS	Chr4	10910080	G-A	Homo	INTERGENIC
SBS	Chr4	10928835	G-T	Hetero	INTERGENIC
SBS	Chr4	16347462	A-T	Homo	INTERGENIC
SBS	Chr4	29038454	A-T	Hetero	INTERGENIC
SBS	Chr4	30043810	T-G	Hetero	INTERGENIC
SBS	Chr5	13202708	G-T	Hetero	INTERGENIC
SBS	Chr5	30122998	G-A	Hetero	INTERGENIC
SBS	Chr6	12491686	T-A	Homo	INTERGENIC
SBS	Chr6	12491687	C-A	Homo	INTERGENIC
SBS	Chr6	25718701	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g228803
SBS	Chr6	27627313	A-C	Hetero	INTERGENIC
SBS	Chr7	1702448	C-T	Hetero	INTRON
SBS	Chr7	26177281	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g240000
SBS	Chr7	28478427	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g271100
SBS	Chr8	5176554	T-C	Homo	INTRON
SBS	Chr8	12344944	C-T	Hetero	INTERGENIC
SBS	Chr8	25740859	G-C	Homo	INTERGENIC
SBS	Chr9	2896960	C-T	Hetero	INTERGENIC
SBS	Chr9	13329437	C-T	Hetero	INTERGENIC
SBS	Chr10	4627391	A-C	Hetero	INTERGENIC
SBS	Chr10	5316523	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr10	17394648	A-T	Hetero	INTERGENIC
SBS	Chr10	24001306	C-T	Hetero	INTERGENIC
SBS	Chr11	1153979	C-A	Hetero	INTERGENIC
SBS	Chr11	1153981	G-T	Hetero	INTERGENIC
SBS	Chr11	15101861	A-C	Homo	INTERGENIC
SBS	Chr11	15101863	T-C	Homo	INTERGENIC
SBS	Chr11	24385621	G-A	Homo	INTERGENIC
SBS	Chr11	25096756	C-T	Homo	INTERGENIC
SBS	Chr12	10394872	G-A	Homo	INTERGENIC
SBS	Chr12	20035224	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1662941	1662950	9	OsKitaake08g021400
Deletion	Chr9	5253505	5253508	3
Deletion	Chr6	5587720	5587737	17
Deletion	Chr11	15442376	15442380	4
Deletion	Chr4	17395026	17395027	1
Deletion	Chr4	17681444	17681446	2
Deletion	Chr4	17681460	17681488	28
Deletion	Chr1	20388038	20388045	7
Deletion	Chr12	22715221	22715230	9	OsKitaake12g179000
Deletion	Chr5	22946001	23047000	100999	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	12325497	12348855	OsKitaake03g166200
Inversion	Chr1	17662657	18460659	OsKitaake01g180150
Inversion	Chr1	17662698	18460673	OsKitaake01g180150
Inversion	Chr1	32464271	32466634	OsKitaake01g328800
Inversion	Chr1	32464276	32466633	OsKitaake01g328800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes