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Mutant Information

Mutant Name	FN2165-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2165-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3882997 C-T Homo INTERGENIC
SBS Chr1 4915631 C-T Hetero INTRON
SBS Chr1 16813985 A-C Homo INTRON
SBS Chr1 20025917 C-T Homo INTERGENIC
SBS Chr1 25387835 G-A Homo INTERGENIC
SBS Chr1 34634445 G-T Homo INTERGENIC
SBS Chr2 4804577 T-A Hetero INTERGENIC
SBS Chr2 18541405 G-A Homo INTERGENIC
SBS Chr2 27825502 G-A Homo INTERGENIC
SBS Chr2 29955875 C-T Homo INTERGENIC
SBS Chr3 12178453 A-G Hetero INTERGENIC
SBS Chr3 32760372 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g347900
SBS Chr3 35024775 C-A Hetero INTERGENIC
SBS Chr4 649642 C-T Hetero INTERGENIC
SBS Chr4 9361947 G-A Homo INTERGENIC
SBS Chr4 12979419 G-A Homo INTERGENIC
SBS Chr4 17136071 G-A Homo INTRON
SBS Chr4 20317883 C-G Homo INTERGENIC
SBS Chr4 26826076 G-T Homo INTERGENIC
SBS Chr4 29672638 A-G Homo INTERGENIC
SBS Chr5 11653045 G-A Hetero INTERGENIC
SBS Chr6 8926885 A-T Hetero INTERGENIC
SBS Chr6 9383906 G-T Hetero INTERGENIC
SBS Chr6 11079167 C-A Hetero INTERGENIC
SBS Chr6 13259841 A-T Hetero INTERGENIC
SBS Chr6 25868761 A-G Hetero UTR_5_PRIME
SBS Chr7 22649169 G-A Hetero INTERGENIC
SBS Chr7 23246557 C-G Hetero INTRON
SBS Chr8 8748404 T-A Homo INTERGENIC
SBS Chr9 5322637 C-A Hetero INTERGENIC
SBS Chr10 11775456 G-A Homo INTERGENIC
SBS Chr10 11775457 G-A Homo INTERGENIC
SBS Chr10 12964137 T-A Homo INTERGENIC
SBS Chr10 15264984 G-A Hetero INTERGENIC
SBS Chr10 19528538 G-A Hetero INTERGENIC
SBS Chr10 21420191 T-A Hetero INTERGENIC
SBS Chr10 21750908 G-A Hetero INTERGENIC
SBS Chr11 2100067 C-A Hetero INTRON
SBS Chr11 5655422 T-A Homo SYNONYMOUS_CODING
SBS Chr11 5655423 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g069200
SBS Chr12 3740269 T-C Hetero INTERGENIC
SBS Chr12 21194512 G-A Homo INTERGENIC
SBS Chr12 21199711 T-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1421734 1421738 4 OsKitaake01g017300
Deletion Chr11 3421990 3422003 13
Deletion Chr1 3962404 3962408 4 OsKitaake01g053400
Deletion Chr6 4404004 4404005 1
Deletion Chr6 4501203 4501204 1
Deletion Chr6 5491200 5491207 7
Deletion Chr8 5976446 5976454 8
Deletion Chr7 6167440 6167442 2
Deletion Chr8 7701184 7701201 17
Deletion Chr2 11420001 11506000 85999 8
Deletion Chr4 11721632 11721634 2
Deletion Chr2 13252384 13252390 6
Deletion Chr3 14395260 14395262 2
Deletion Chr2 15904271 15904276 5
Deletion Chr5 16896967 16896969 2
Deletion Chr4 30140752 30140761 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 4964445 4964448 2
Insertion Chr7 3416576 3416579 2
Insertion Chr8 25768391 25768394 2
Insertion Chr12 95794 95797 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3115863 3408656 OsKitaake08g035100
Inversion Chr8 3116081 3408667
Inversion Chr7 6870388 7067152
Inversion Chr7 6870395 7067153

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 13644878 Chr2 24292315
Translocation Chr6 13645923 Chr2 24292320
Translocation Chr11 17117389 Chr5 23320798 2
Translocation Chr11 17118991 Chr5 23320796 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3882997	C-T	Homo	INTERGENIC
SBS	Chr1	4915631	C-T	Hetero	INTRON
SBS	Chr1	16813985	A-C	Homo	INTRON
SBS	Chr1	20025917	C-T	Homo	INTERGENIC
SBS	Chr1	25387835	G-A	Homo	INTERGENIC
SBS	Chr1	34634445	G-T	Homo	INTERGENIC
SBS	Chr2	4804577	T-A	Hetero	INTERGENIC
SBS	Chr2	18541405	G-A	Homo	INTERGENIC
SBS	Chr2	27825502	G-A	Homo	INTERGENIC
SBS	Chr2	29955875	C-T	Homo	INTERGENIC
SBS	Chr3	12178453	A-G	Hetero	INTERGENIC
SBS	Chr3	32760372	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g347900
SBS	Chr3	35024775	C-A	Hetero	INTERGENIC
SBS	Chr4	649642	C-T	Hetero	INTERGENIC
SBS	Chr4	9361947	G-A	Homo	INTERGENIC
SBS	Chr4	12979419	G-A	Homo	INTERGENIC
SBS	Chr4	17136071	G-A	Homo	INTRON
SBS	Chr4	20317883	C-G	Homo	INTERGENIC
SBS	Chr4	26826076	G-T	Homo	INTERGENIC
SBS	Chr4	29672638	A-G	Homo	INTERGENIC
SBS	Chr5	11653045	G-A	Hetero	INTERGENIC
SBS	Chr6	8926885	A-T	Hetero	INTERGENIC
SBS	Chr6	9383906	G-T	Hetero	INTERGENIC
SBS	Chr6	11079167	C-A	Hetero	INTERGENIC
SBS	Chr6	13259841	A-T	Hetero	INTERGENIC
SBS	Chr6	25868761	A-G	Hetero	UTR_5_PRIME
SBS	Chr7	22649169	G-A	Hetero	INTERGENIC
SBS	Chr7	23246557	C-G	Hetero	INTRON
SBS	Chr8	8748404	T-A	Homo	INTERGENIC
SBS	Chr9	5322637	C-A	Hetero	INTERGENIC
SBS	Chr10	11775456	G-A	Homo	INTERGENIC
SBS	Chr10	11775457	G-A	Homo	INTERGENIC
SBS	Chr10	12964137	T-A	Homo	INTERGENIC
SBS	Chr10	15264984	G-A	Hetero	INTERGENIC
SBS	Chr10	19528538	G-A	Hetero	INTERGENIC
SBS	Chr10	21420191	T-A	Hetero	INTERGENIC
SBS	Chr10	21750908	G-A	Hetero	INTERGENIC
SBS	Chr11	2100067	C-A	Hetero	INTRON
SBS	Chr11	5655422	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	5655423	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g069200
SBS	Chr12	3740269	T-C	Hetero	INTERGENIC
SBS	Chr12	21194512	G-A	Homo	INTERGENIC
SBS	Chr12	21199711	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1421734	1421738	4	OsKitaake01g017300
Deletion	Chr11	3421990	3422003	13
Deletion	Chr1	3962404	3962408	4	OsKitaake01g053400
Deletion	Chr6	4404004	4404005	1
Deletion	Chr6	4501203	4501204	1
Deletion	Chr6	5491200	5491207	7
Deletion	Chr8	5976446	5976454	8
Deletion	Chr7	6167440	6167442	2
Deletion	Chr8	7701184	7701201	17
Deletion	Chr2	11420001	11506000	85999	8
Deletion	Chr4	11721632	11721634	2
Deletion	Chr2	13252384	13252390	6
Deletion	Chr3	14395260	14395262	2
Deletion	Chr2	15904271	15904276	5
Deletion	Chr5	16896967	16896969	2
Deletion	Chr4	30140752	30140761	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3115863	3408656	OsKitaake08g035100
Inversion	Chr8	3116081	3408667
Inversion	Chr7	6870388	7067152
Inversion	Chr7	6870395	7067153

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes