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Mutant Information

Mutant Name	FN2167-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2167-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Hetero INTERGENIC
SBS Chr1 32376031 A-T Hetero INTRON
SBS Chr1 41223299 T-A Homo UTR_3_PRIME
SBS Chr2 11524070 T-A Hetero INTERGENIC
SBS Chr2 25920985 A-T Homo INTERGENIC
SBS Chr2 31844467 T-C Hetero INTERGENIC
SBS Chr3 5357129 G-A Homo INTERGENIC
SBS Chr3 21395289 A-G Hetero INTERGENIC
SBS Chr3 29168562 C-A Hetero INTERGENIC
SBS Chr3 33933644 T-C Hetero UTR_3_PRIME
SBS Chr3 35860493 C-T Hetero INTERGENIC
SBS Chr4 23226778 G-A Hetero INTERGENIC
SBS Chr5 21408122 G-A Hetero INTERGENIC
SBS Chr6 18757634 C-A Hetero INTERGENIC
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 15724253 C-A Hetero INTERGENIC
SBS Chr7 17723310 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g143900
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 9396443 G-A Hetero INTERGENIC
SBS Chr8 15747819 A-C Hetero INTERGENIC
SBS Chr8 20502699 G-A Hetero INTERGENIC
SBS Chr9 7270923 G-A Hetero INTERGENIC
SBS Chr9 15874255 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g113300
SBS Chr11 11892738 A-T Hetero INTERGENIC
SBS Chr11 16626316 T-G Homo INTERGENIC
SBS Chr12 3337546 G-A Hetero INTERGENIC
SBS Chr12 18640051 G-T Homo INTRON
SBS Chr12 25929117 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 357716 357718 2
Deletion Chr4 6252001 6265000 12999 OsKitaake04g031200
Deletion Chr12 8415327 8415329 2
Deletion Chr1 10708001 10719000 10999
Deletion Chr11 13687001 13740000 52999 2
Deletion Chr2 14454147 14454163 16
Deletion Chr11 16961481 16961482 1
Deletion Chr5 24301532 24301538 6
Deletion Chr1 30138001 30156000 17999
Deletion Chr1 34647065 34647066 1 OsKitaake01g363700
Deletion Chr1 41369750 41369754 4

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6221071 6221074 2
Insertion Chr7 21571947 21571950 2
Insertion Chr7 26091602 26091605 2
Insertion Chr5 11224004 11224006 1
Insertion Chr5 30236466 30236474 7
Insertion Chr6 14325535 14325593 57

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7132712 7137147
Inversion Chr4 7132727 7137152

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Hetero	INTERGENIC
SBS	Chr1	32376031	A-T	Hetero	INTRON
SBS	Chr1	41223299	T-A	Homo	UTR_3_PRIME
SBS	Chr2	11524070	T-A	Hetero	INTERGENIC
SBS	Chr2	25920985	A-T	Homo	INTERGENIC
SBS	Chr2	31844467	T-C	Hetero	INTERGENIC
SBS	Chr3	5357129	G-A	Homo	INTERGENIC
SBS	Chr3	21395289	A-G	Hetero	INTERGENIC
SBS	Chr3	29168562	C-A	Hetero	INTERGENIC
SBS	Chr3	33933644	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	35860493	C-T	Hetero	INTERGENIC
SBS	Chr4	23226778	G-A	Hetero	INTERGENIC
SBS	Chr5	21408122	G-A	Hetero	INTERGENIC
SBS	Chr6	18757634	C-A	Hetero	INTERGENIC
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	15724253	C-A	Hetero	INTERGENIC
SBS	Chr7	17723310	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g143900
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	9396443	G-A	Hetero	INTERGENIC
SBS	Chr8	15747819	A-C	Hetero	INTERGENIC
SBS	Chr8	20502699	G-A	Hetero	INTERGENIC
SBS	Chr9	7270923	G-A	Hetero	INTERGENIC
SBS	Chr9	15874255	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g113300
SBS	Chr11	11892738	A-T	Hetero	INTERGENIC
SBS	Chr11	16626316	T-G	Homo	INTERGENIC
SBS	Chr12	3337546	G-A	Hetero	INTERGENIC
SBS	Chr12	18640051	G-T	Homo	INTRON
SBS	Chr12	25929117	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	357716	357718	2
Deletion	Chr4	6252001	6265000	12999	OsKitaake04g031200
Deletion	Chr12	8415327	8415329	2
Deletion	Chr1	10708001	10719000	10999
Deletion	Chr11	13687001	13740000	52999	2
Deletion	Chr2	14454147	14454163	16
Deletion	Chr11	16961481	16961482	1
Deletion	Chr5	24301532	24301538	6
Deletion	Chr1	30138001	30156000	17999
Deletion	Chr1	34647065	34647066	1	OsKitaake01g363700
Deletion	Chr1	41369750	41369754	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7132712	7137147
Inversion	Chr4	7132727	7137152

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes