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| Mutant Information |
|---|
| Mutant Name | FN2172-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2172-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 42
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15448667 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 16484590 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 29378704 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 6923390 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 9040851 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 13054817 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 17103702 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 21311185 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 24303726 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g240800 |
| SBS | Chr2 | 28202172 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33453451 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 2990543 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19848898 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30099481 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 30720582 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 12774943 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 28089099 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 4267613 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11250757 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14639761 | G-A | Homo | INTRON | |
| SBS | Chr5 | 14639762 | G-A | Homo | INTRON | |
| SBS | Chr6 | 3549637 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 17985315 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18190037 | C-A | Hetero | INTRON | |
| SBS | Chr6 | 18800258 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 22142015 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13251034 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 25941670 | C-G | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 570471 | T-G | Homo | INTRON | |
| SBS | Chr8 | 3516930 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4307092 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 5014857 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 11379480 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12819815 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2662368 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 3523013 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21720632 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 3474320 | G-C | Hetero | INTRON | |
| SBS | Chr12 | 11392045 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13802448 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 16052612 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25392656 | A-T | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 6920770 | 6920779 | 9 | |
| Deletion | Chr11 | 7513023 | 7513024 | 1 | |
| Deletion | Chr7 | 10119209 | 10119214 | 5 | |
| Deletion | Chr3 | 15558045 | 15558046 | 1 | |
| Deletion | Chr11 | 16218001 | 16368000 | 149999 | 11 |
| Deletion | Chr10 | 16450020 | 16450027 | 7 | OsKitaake10g111600 |
| Deletion | Chr11 | 16722001 | 16778000 | 55999 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 3924524 | 3924528 | 3 | |
| Insertion | Chr1 | 9692959 | 9692961 | 1 | |
| Insertion | Chr6 | 17621 | 17623 | 1 |