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Mutant Information

Mutant Name	FN2173-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2173-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16113507 T-G Homo INTERGENIC
SBS Chr1 34815505 G-C Hetero UTR_5_PRIME
SBS Chr1 35796728 G-C Hetero INTERGENIC
SBS Chr2 6674102 T-C Homo INTERGENIC
SBS Chr2 10372205 G-A Homo INTERGENIC
SBS Chr2 20691981 G-A Hetero INTERGENIC
SBS Chr3 4841013 G-A Hetero INTERGENIC
SBS Chr3 15220421 A-C Hetero INTERGENIC
SBS Chr3 24292922 A-C Hetero INTERGENIC
SBS Chr3 28770653 T-C Homo INTERGENIC
SBS Chr3 28893958 G-T Hetero INTERGENIC
SBS Chr3 29596339 G-A Homo INTERGENIC
SBS Chr3 30607889 C-T Homo INTERGENIC
SBS Chr3 34195643 G-C Homo INTERGENIC
SBS Chr4 2267807 G-A Homo INTERGENIC
SBS Chr4 36401748 A-G Hetero UTR_3_PRIME
SBS Chr5 623034 T-A Hetero INTERGENIC
SBS Chr5 18187210 A-C Hetero INTERGENIC
SBS Chr6 2303507 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g029900
SBS Chr6 10201497 C-T Hetero INTERGENIC
SBS Chr6 16592909 G-C Hetero INTERGENIC
SBS Chr7 6716854 G-A Homo INTERGENIC
SBS Chr7 10531127 G-A Homo INTERGENIC
SBS Chr8 3428152 G-A Hetero INTERGENIC
SBS Chr8 3435591 G-T Hetero INTERGENIC
SBS Chr8 3435592 G-T Hetero INTERGENIC
SBS Chr8 15864229 A-C Hetero INTERGENIC
SBS Chr8 20493615 G-A Hetero INTERGENIC
SBS Chr9 4017730 C-G Hetero INTERGENIC
SBS Chr10 9683134 T-C Homo INTERGENIC
SBS Chr10 10326513 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g059900
SBS Chr11 16328369 C-A Homo INTERGENIC
SBS Chr12 9584967 G-A Homo INTERGENIC
SBS Chr12 9975190 A-G Homo INTERGENIC
SBS Chr12 15455357 A-T Homo INTERGENIC
SBS Chr12 21612343 G-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 385743 385745 2
Deletion Chr3 1080446 1080457 11
Deletion Chr3 1150011 1150013 2
Deletion Chr10 2356184 2356193 9
Deletion Chr7 5605843 5605844 1
Deletion Chr12 8023461 8023478 17
Deletion Chr10 14040707 14040717 10
Deletion Chr12 15455261 15455272 11
Deletion Chr11 15813001 15858000 44999 OsKitaake11g127100
Deletion Chr8 17264253 17264339 86
Deletion Chr5 18304308 18304309 1
Deletion Chr7 18696316 18696328 12
Deletion Chr10 19742777 19742791 14 OsKitaake10g146400
Deletion Chr10 22321374 22321377 3
Deletion Chr4 23065001 23074000 8999
Deletion Chr2 27620553 27620556 3
Deletion Chr2 32261953 32261961 8
Deletion Chr2 34943025 34943029 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 26912875 26912878 2
Insertion Chr7 18906329 18906332 2
Insertion Chr8 1396065 1396067 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 42985401 43323341 OsKitaake01g479200
Inversion Chr1 42987593 43323355 OsKitaake01g479200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 18464458 Chr1 43323355 OsKitaake01g479200
Translocation Chr6 18464775 Chr1 42987593

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16113507	T-G	Homo	INTERGENIC
SBS	Chr1	34815505	G-C	Hetero	UTR_5_PRIME
SBS	Chr1	35796728	G-C	Hetero	INTERGENIC
SBS	Chr2	6674102	T-C	Homo	INTERGENIC
SBS	Chr2	10372205	G-A	Homo	INTERGENIC
SBS	Chr2	20691981	G-A	Hetero	INTERGENIC
SBS	Chr3	4841013	G-A	Hetero	INTERGENIC
SBS	Chr3	15220421	A-C	Hetero	INTERGENIC
SBS	Chr3	24292922	A-C	Hetero	INTERGENIC
SBS	Chr3	28770653	T-C	Homo	INTERGENIC
SBS	Chr3	28893958	G-T	Hetero	INTERGENIC
SBS	Chr3	29596339	G-A	Homo	INTERGENIC
SBS	Chr3	30607889	C-T	Homo	INTERGENIC
SBS	Chr3	34195643	G-C	Homo	INTERGENIC
SBS	Chr4	2267807	G-A	Homo	INTERGENIC
SBS	Chr4	36401748	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	623034	T-A	Hetero	INTERGENIC
SBS	Chr5	18187210	A-C	Hetero	INTERGENIC
SBS	Chr6	2303507	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g029900
SBS	Chr6	10201497	C-T	Hetero	INTERGENIC
SBS	Chr6	16592909	G-C	Hetero	INTERGENIC
SBS	Chr7	6716854	G-A	Homo	INTERGENIC
SBS	Chr7	10531127	G-A	Homo	INTERGENIC
SBS	Chr8	3428152	G-A	Hetero	INTERGENIC
SBS	Chr8	3435591	G-T	Hetero	INTERGENIC
SBS	Chr8	3435592	G-T	Hetero	INTERGENIC
SBS	Chr8	15864229	A-C	Hetero	INTERGENIC
SBS	Chr8	20493615	G-A	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Hetero	INTERGENIC
SBS	Chr10	9683134	T-C	Homo	INTERGENIC
SBS	Chr10	10326513	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g059900
SBS	Chr11	16328369	C-A	Homo	INTERGENIC
SBS	Chr12	9584967	G-A	Homo	INTERGENIC
SBS	Chr12	9975190	A-G	Homo	INTERGENIC
SBS	Chr12	15455357	A-T	Homo	INTERGENIC
SBS	Chr12	21612343	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	385743	385745	2
Deletion	Chr3	1080446	1080457	11
Deletion	Chr3	1150011	1150013	2
Deletion	Chr10	2356184	2356193	9
Deletion	Chr7	5605843	5605844	1
Deletion	Chr12	8023461	8023478	17
Deletion	Chr10	14040707	14040717	10
Deletion	Chr12	15455261	15455272	11
Deletion	Chr11	15813001	15858000	44999	OsKitaake11g127100
Deletion	Chr8	17264253	17264339	86
Deletion	Chr5	18304308	18304309	1
Deletion	Chr7	18696316	18696328	12
Deletion	Chr10	19742777	19742791	14	OsKitaake10g146400
Deletion	Chr10	22321374	22321377	3
Deletion	Chr4	23065001	23074000	8999
Deletion	Chr2	27620553	27620556	3
Deletion	Chr2	32261953	32261961	8
Deletion	Chr2	34943025	34943029	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	42985401	43323341	OsKitaake01g479200
Inversion	Chr1	42987593	43323355	OsKitaake01g479200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes