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| Mutant Information |
|---|
| Mutant Name | FN2174-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2174-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10647939 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 13510316 | A-C | Hetero | INTRON | |
| SBS | Chr1 | 31478584 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 39617010 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 10742223 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16558689 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27126768 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 1523059 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 20395314 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 33592475 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 23083129 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 6753111 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9526359 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 12087775 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 12589912 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17513494 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7276298 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16916497 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 22171532 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 23514224 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8900853 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 14048666 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17772952 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 2712309 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4276918 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 8272006 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 9361351 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 3630133 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5780342 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14950083 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 4939133 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 27077322 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 612809 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7951573 | A-C | Hetero | INTRON | |
| SBS | Chr12 | 14271465 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 16140411 | C-G | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1862497 | 1862498 | 1 | |
| Deletion | Chr11 | 7477182 | 7477183 | 1 | OsKitaake11g084366 |
| Deletion | Chr10 | 8096190 | 8096273 | 83 | |
| Deletion | Chr10 | 12486538 | 12486539 | 1 | |
| Deletion | Chr3 | 16179465 | 16179468 | 3 | |
| Deletion | Chr12 | 18221469 | 18221472 | 3 | |
| Deletion | Chr7 | 23662001 | 23747000 | 84999 | 8 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 17734083 | 17734088 | 4 | |
| Insertion | Chr2 | 24332900 | 24332903 | 2 | |
| Insertion | Chr4 | 24002018 | 24002021 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 5484082 | Chr5 | 27616932 | OsKitaake08g059800 |
| Translocation | Chr8 | 5660440 | Chr5 | 27616938 | OsKitaake08g061800 |