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Mutant Information

Mutant Name	FN2175-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2175-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7167670 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g089300
SBS Chr1 7631128 G-A Hetero INTERGENIC
SBS Chr1 19128892 C-A Hetero INTERGENIC
SBS Chr2 2298195 C-T Hetero INTERGENIC
SBS Chr2 20958698 C-T Homo INTRON
SBS Chr3 2540563 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g035700
SBS Chr3 10172693 G-A Hetero INTERGENIC
SBS Chr3 16750924 C-T Hetero INTERGENIC
SBS Chr3 26503968 T-C Hetero INTERGENIC
SBS Chr3 28505328 A-G Hetero INTRON
SBS Chr4 2140008 A-G Homo INTRON
SBS Chr4 8022164 G-C Homo INTERGENIC
SBS Chr4 27194579 T-C Homo INTERGENIC
SBS Chr5 978790 A-T Hetero INTERGENIC
SBS Chr5 6429367 T-C Homo INTERGENIC
SBS Chr5 10201820 G-A Homo INTERGENIC
SBS Chr6 771815 C-A Hetero INTRON
SBS Chr6 12776461 A-T Hetero INTERGENIC
SBS Chr7 13641029 C-G Hetero INTERGENIC
SBS Chr7 23572933 A-C Hetero INTERGENIC
SBS Chr8 1250760 A-C Hetero INTERGENIC
SBS Chr8 5393572 C-A Hetero SPLICE_SITE_ACCEPTOR OsKitaake08g058600
SBS Chr8 11172478 A-C Homo INTERGENIC
SBS Chr8 14996762 G-A Hetero INTERGENIC
SBS Chr8 21880962 T-A Homo UTR_3_PRIME
SBS Chr8 27719548 C-T Hetero INTERGENIC
SBS Chr9 16607440 A-T Homo INTERGENIC
SBS Chr9 21254841 C-T Homo INTERGENIC
SBS Chr9 21256178 C-A Homo INTERGENIC
SBS Chr10 20194058 A-T Hetero INTERGENIC
SBS Chr10 20827441 A-G Hetero INTERGENIC
SBS Chr11 9776085 C-T Hetero INTERGENIC
SBS Chr11 16969183 A-G Hetero INTERGENIC
SBS Chr12 2156684 G-A Hetero INTERGENIC
SBS Chr12 23776996 T-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2669001 2994000 324999 46
Deletion Chr1 4451867 4451952 85
Deletion Chr12 8964498 8964504 6
Deletion Chr11 11282001 11301000 18999 2
Deletion Chr5 12388537 12388539 2
Deletion Chr11 12463451 12463476 25
Deletion Chr1 14967001 14993000 25999 8
Deletion Chr3 15166914 15166915 1
Deletion Chr6 16743463 16743464 1
Deletion Chr8 19701226 19701231 5
Deletion Chr4 20718058 20718067 9
Deletion Chr2 20931351 20931352 1
Deletion Chr9 21254926 21254940 14

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 10973784 11216759 OsKitaake02g128300
Inversion Chr2 10973786 11216762 OsKitaake02g128300

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 13266854 Chr5 18606651
Translocation Chr9 13369796 Chr5 18604063 OsKitaake09g088900
Translocation Chr3 36295368 Chr1 15084817 OsKitaake03g402500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7167670	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g089300
SBS	Chr1	7631128	G-A	Hetero	INTERGENIC
SBS	Chr1	19128892	C-A	Hetero	INTERGENIC
SBS	Chr2	2298195	C-T	Hetero	INTERGENIC
SBS	Chr2	20958698	C-T	Homo	INTRON
SBS	Chr3	2540563	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g035700
SBS	Chr3	10172693	G-A	Hetero	INTERGENIC
SBS	Chr3	16750924	C-T	Hetero	INTERGENIC
SBS	Chr3	26503968	T-C	Hetero	INTERGENIC
SBS	Chr3	28505328	A-G	Hetero	INTRON
SBS	Chr4	2140008	A-G	Homo	INTRON
SBS	Chr4	8022164	G-C	Homo	INTERGENIC
SBS	Chr4	27194579	T-C	Homo	INTERGENIC
SBS	Chr5	978790	A-T	Hetero	INTERGENIC
SBS	Chr5	6429367	T-C	Homo	INTERGENIC
SBS	Chr5	10201820	G-A	Homo	INTERGENIC
SBS	Chr6	771815	C-A	Hetero	INTRON
SBS	Chr6	12776461	A-T	Hetero	INTERGENIC
SBS	Chr7	13641029	C-G	Hetero	INTERGENIC
SBS	Chr7	23572933	A-C	Hetero	INTERGENIC
SBS	Chr8	1250760	A-C	Hetero	INTERGENIC
SBS	Chr8	5393572	C-A	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake08g058600
SBS	Chr8	11172478	A-C	Homo	INTERGENIC
SBS	Chr8	14996762	G-A	Hetero	INTERGENIC
SBS	Chr8	21880962	T-A	Homo	UTR_3_PRIME
SBS	Chr8	27719548	C-T	Hetero	INTERGENIC
SBS	Chr9	16607440	A-T	Homo	INTERGENIC
SBS	Chr9	21254841	C-T	Homo	INTERGENIC
SBS	Chr9	21256178	C-A	Homo	INTERGENIC
SBS	Chr10	20194058	A-T	Hetero	INTERGENIC
SBS	Chr10	20827441	A-G	Hetero	INTERGENIC
SBS	Chr11	9776085	C-T	Hetero	INTERGENIC
SBS	Chr11	16969183	A-G	Hetero	INTERGENIC
SBS	Chr12	2156684	G-A	Hetero	INTERGENIC
SBS	Chr12	23776996	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2669001	2994000	324999	46
Deletion	Chr1	4451867	4451952	85
Deletion	Chr12	8964498	8964504	6
Deletion	Chr11	11282001	11301000	18999	2
Deletion	Chr5	12388537	12388539	2
Deletion	Chr11	12463451	12463476	25
Deletion	Chr1	14967001	14993000	25999	8
Deletion	Chr3	15166914	15166915	1
Deletion	Chr6	16743463	16743464	1
Deletion	Chr8	19701226	19701231	5
Deletion	Chr4	20718058	20718067	9
Deletion	Chr2	20931351	20931352	1
Deletion	Chr9	21254926	21254940	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	10973784	11216759	OsKitaake02g128300
Inversion	Chr2	10973786	11216762	OsKitaake02g128300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes