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| Mutant Information |
|---|
| Mutant Name | FN2178-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2178-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16866930 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29017954 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19826517 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 21332865 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 7990226 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25737222 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 28826299 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 11372765 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 14705056 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19510165 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 19757014 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33765510 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 1806704 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13948271 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23499669 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26170610 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8268234 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12025054 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 23613560 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9914760 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 24353579 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 29410086 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 3227818 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g036200 |
| SBS | Chr8 | 7803334 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 8194283 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 11250616 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 18909263 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 19323090 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20059867 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 20362020 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11353894 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 13252831 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 380058 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 12357745 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 16605719 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 21661447 | G-T | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1793324 | 1793331 | 7 | |
| Deletion | Chr6 | 8376904 | 8376906 | 2 | |
| Deletion | Chr11 | 8524692 | 8524694 | 2 | OsKitaake11g092500 |
| Deletion | Chr10 | 19498846 | 19498847 | 1 | |
| Deletion | Chr8 | 19641557 | 19641560 | 3 | OsKitaake08g144300 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 43431302 | 43431307 | 4 | |
| Insertion | Chr6 | 12650871 | 12650874 | 2 | |
| Insertion | Chr8 | 1309670 | 1309673 | 2 | |
| Insertion | Chr5 | 17866340 | 17866344 | 3 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 13931056 | Chr10 | 8624148 | |
| Translocation | Chr10 | 17361288 | Chr5 | 28941966 | |
| Translocation | Chr10 | 17368923 | Chr1 | 15487045 |