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Mutant Information

Mutant Name	FN2214-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2214-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 9553449 G-A Homo INTERGENIC
SBS Chr2 14589766 A-C Hetero INTERGENIC
SBS Chr2 27653719 C-T Homo INTERGENIC
SBS Chr3 47489 C-T Hetero INTERGENIC
SBS Chr3 19926046 G-A Hetero INTERGENIC
SBS Chr3 32201447 G-A Hetero INTRON
SBS Chr4 6461640 A-T Hetero INTERGENIC
SBS Chr4 33505571 G-T Hetero INTERGENIC
SBS Chr5 26384964 T-C Hetero INTERGENIC
SBS Chr8 794631 T-C Hetero INTERGENIC
SBS Chr8 4684580 C-A Hetero INTERGENIC
SBS Chr8 15093754 G-A Hetero INTERGENIC
SBS Chr8 16750641 G-A Hetero INTERGENIC
SBS Chr8 19970372 G-T Hetero INTERGENIC
SBS Chr9 22300042 T-G Hetero INTERGENIC
SBS Chr10 1056791 G-A Hetero INTRON
SBS Chr10 1280835 C-T Hetero INTERGENIC
SBS Chr10 12293354 G-A Homo INTERGENIC
SBS Chr10 12293355 G-A Homo INTERGENIC
SBS Chr10 12293356 C-A Homo INTERGENIC
SBS Chr10 18316391 C-T Hetero INTERGENIC
SBS Chr10 20195842 A-T Hetero INTERGENIC
SBS Chr10 22469812 C-T Hetero INTERGENIC
SBS Chr11 428104 C-T Hetero INTERGENIC
SBS Chr11 21482610 T-G Homo INTERGENIC
SBS Chr12 17940256 T-A Hetero INTERGENIC
SBS Chr12 18322603 C-G Hetero INTERGENIC
SBS Chr12 21779264 T-G Homo INTERGENIC
SBS Chr12 23250314 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g185900

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3283498 3283516 18 OsKitaake03g046300
Deletion Chr1 3926097 3926098 1 OsKitaake01g052900
Deletion Chr2 5659850 5659871 21
Deletion Chr3 6937598 6937599 1
Deletion Chr2 9109297 9109311 14
Deletion Chr9 12852153 12852156 3 OsKitaake09g085300
Deletion Chr9 12956001 12986000 29999
Deletion Chr9 12988001 13059000 70999 3
Deletion Chr11 13001001 13391000 389999 5
Deletion Chr3 18243880 18243881 1
Deletion Chr2 18722210 18722212 2
Deletion Chr3 21907348 21907354 6
Deletion Chr10 22992675 22992683 8
Deletion Chr8 23876001 23917000 40999 2
Deletion Chr4 30805217 30805236 19 OsKitaake04g238300
Deletion Chr2 34934591 34934597 6
Deletion Chr1 42327636 42327637 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13150477 13150480 2
Insertion Chr3 21106487 21106490 2
Insertion Chr3 23646190 23646193 2
Insertion Chr3 34676059 34676062 2 OsKitaake03g377400
Insertion Chr4 21760321 21760324 2
Insertion Chr5 15001257 15001260 2
Insertion Chr6 10242391 10242394 2
Insertion Chr12 4636245 4636248 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 7058114 7148810
Inversion Chr5 7058127 7148952
Inversion Chr10 10698635 11200552
Inversion Chr10 11373829 11386486
Inversion Chr4 31970285 32948959 OsKitaake04g266700

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 17473503 Chr5 21558248
Translocation Chr11 17473978 Chr5 21558055
Translocation Chr5 26138773 Chr4 31849164 2
Translocation Chr5 26138776 Chr4 32948047 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	9553449	G-A	Homo	INTERGENIC
SBS	Chr2	14589766	A-C	Hetero	INTERGENIC
SBS	Chr2	27653719	C-T	Homo	INTERGENIC
SBS	Chr3	47489	C-T	Hetero	INTERGENIC
SBS	Chr3	19926046	G-A	Hetero	INTERGENIC
SBS	Chr3	32201447	G-A	Hetero	INTRON
SBS	Chr4	6461640	A-T	Hetero	INTERGENIC
SBS	Chr4	33505571	G-T	Hetero	INTERGENIC
SBS	Chr5	26384964	T-C	Hetero	INTERGENIC
SBS	Chr8	794631	T-C	Hetero	INTERGENIC
SBS	Chr8	4684580	C-A	Hetero	INTERGENIC
SBS	Chr8	15093754	G-A	Hetero	INTERGENIC
SBS	Chr8	16750641	G-A	Hetero	INTERGENIC
SBS	Chr8	19970372	G-T	Hetero	INTERGENIC
SBS	Chr9	22300042	T-G	Hetero	INTERGENIC
SBS	Chr10	1056791	G-A	Hetero	INTRON
SBS	Chr10	1280835	C-T	Hetero	INTERGENIC
SBS	Chr10	12293354	G-A	Homo	INTERGENIC
SBS	Chr10	12293355	G-A	Homo	INTERGENIC
SBS	Chr10	12293356	C-A	Homo	INTERGENIC
SBS	Chr10	18316391	C-T	Hetero	INTERGENIC
SBS	Chr10	20195842	A-T	Hetero	INTERGENIC
SBS	Chr10	22469812	C-T	Hetero	INTERGENIC
SBS	Chr11	428104	C-T	Hetero	INTERGENIC
SBS	Chr11	21482610	T-G	Homo	INTERGENIC
SBS	Chr12	17940256	T-A	Hetero	INTERGENIC
SBS	Chr12	18322603	C-G	Hetero	INTERGENIC
SBS	Chr12	21779264	T-G	Homo	INTERGENIC
SBS	Chr12	23250314	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g185900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3283498	3283516	18	OsKitaake03g046300
Deletion	Chr1	3926097	3926098	1	OsKitaake01g052900
Deletion	Chr2	5659850	5659871	21
Deletion	Chr3	6937598	6937599	1
Deletion	Chr2	9109297	9109311	14
Deletion	Chr9	12852153	12852156	3	OsKitaake09g085300
Deletion	Chr9	12956001	12986000	29999
Deletion	Chr9	12988001	13059000	70999	3
Deletion	Chr11	13001001	13391000	389999	5
Deletion	Chr3	18243880	18243881	1
Deletion	Chr2	18722210	18722212	2
Deletion	Chr3	21907348	21907354	6
Deletion	Chr10	22992675	22992683	8
Deletion	Chr8	23876001	23917000	40999	2
Deletion	Chr4	30805217	30805236	19	OsKitaake04g238300
Deletion	Chr2	34934591	34934597	6
Deletion	Chr1	42327636	42327637	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	7058114	7148810
Inversion	Chr5	7058127	7148952
Inversion	Chr10	10698635	11200552
Inversion	Chr10	11373829	11386486
Inversion	Chr4	31970285	32948959	OsKitaake04g266700

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes