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Mutant Information

Mutant Name	FN2215-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2215-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13087011 G-A Hetero INTRON
SBS Chr1 13463814 G-A Homo INTRON
SBS Chr1 14136302 C-T Hetero INTERGENIC
SBS Chr1 16748416 A-T Hetero INTERGENIC
SBS Chr1 19001905 C-T Homo INTERGENIC
SBS Chr1 24860260 A-G Hetero INTERGENIC
SBS Chr1 24860263 C-T Hetero INTERGENIC
SBS Chr1 38231905 G-A Hetero INTERGENIC
SBS Chr1 41979761 A-G Hetero INTERGENIC
SBS Chr1 43132391 G-A Homo INTERGENIC
SBS Chr2 9865744 C-T Hetero INTERGENIC
SBS Chr2 13928905 C-T Hetero INTERGENIC
SBS Chr2 15087032 G-C Homo INTERGENIC
SBS Chr3 364045 G-T Hetero INTERGENIC
SBS Chr3 12011781 A-G Hetero INTERGENIC
SBS Chr3 26871345 G-A Homo INTERGENIC
SBS Chr3 27755565 C-T Homo INTERGENIC
SBS Chr3 29077788 C-T Hetero INTERGENIC
SBS Chr3 32560730 T-G Hetero INTERGENIC
SBS Chr4 4698457 A-G Hetero INTERGENIC
SBS Chr4 17493224 T-A Hetero INTERGENIC
SBS Chr4 20480409 G-A Hetero INTERGENIC
SBS Chr4 27381176 C-T Homo INTERGENIC
SBS Chr7 16982546 C-T Hetero INTRON
SBS Chr7 20113718 C-T Homo INTERGENIC
SBS Chr8 3342169 C-T Homo UTR_3_PRIME
SBS Chr8 8077316 G-T Hetero INTRON
SBS Chr8 17090229 C-T Hetero INTERGENIC
SBS Chr8 21539621 T-G Hetero INTERGENIC
SBS Chr9 2045875 A-T Homo INTERGENIC
SBS Chr9 3194709 C-G Homo INTERGENIC
SBS Chr9 12228329 G-A Homo INTERGENIC
SBS Chr10 9476701 G-A Hetero INTERGENIC
SBS Chr11 1424933 C-G Hetero INTERGENIC
SBS Chr11 24543887 A-G Homo INTERGENIC
SBS Chr12 8366187 C-A Hetero INTERGENIC
SBS Chr12 11106188 A-G Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 769785 769789 4
Deletion Chr4 1825659 1825661 2
Deletion Chr6 1930900 1930906 6
Deletion Chr10 2182883 2182885 2
Deletion Chr4 2884620 2884625 5
Deletion Chr11 4162142 4162145 3 OsKitaake11g056500
Deletion Chr7 4732247 4732257 10
Deletion Chr3 6200001 6211000 10999
Deletion Chr2 6913125 6913141 16 OsKitaake02g093900
Deletion Chr1 7065831 7065845 14
Deletion Chr6 8654896 8654908 12
Deletion Chr8 9846607 9846608 1
Deletion Chr12 10297203 10297208 5
Deletion Chr1 11712485 11712498 13
Deletion Chr3 17826514 17826518 4 OsKitaake03g218400
Deletion Chr1 18673192 18673207 15
Deletion Chr2 19854978 19854986 8
Deletion Chr4 20350699 20350703 4
Deletion Chr7 20817644 20817646 2
Deletion Chr2 21174064 21174066 2
Deletion Chr5 23688141 23688145 4
Deletion Chr1 26025397 26025398 1
Deletion Chr12 26727781 26727787 6
Deletion Chr1 28043425 28043430 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 7057848 7057851 2
Insertion Chr7 10604815 10604818 2
Insertion Chr12 13693529 13693533 3
Insertion Chr12 17570513 17570516 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 2761033 2792500 OsKitaake11g038800
Inversion Chr11 2761035 2792499 OsKitaake11g038800
Inversion Chr5 12229411 12245529

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 105930 Chr3 6200801
Translocation Chr11 105949 Chr3 6200378
Translocation Chr5 6114039 Chr2 27221117 2
Translocation Chr5 6114044 Chr2 27217950 OsKitaake05g063500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13087011	G-A	Hetero	INTRON
SBS	Chr1	13463814	G-A	Homo	INTRON
SBS	Chr1	14136302	C-T	Hetero	INTERGENIC
SBS	Chr1	16748416	A-T	Hetero	INTERGENIC
SBS	Chr1	19001905	C-T	Homo	INTERGENIC
SBS	Chr1	24860260	A-G	Hetero	INTERGENIC
SBS	Chr1	24860263	C-T	Hetero	INTERGENIC
SBS	Chr1	38231905	G-A	Hetero	INTERGENIC
SBS	Chr1	41979761	A-G	Hetero	INTERGENIC
SBS	Chr1	43132391	G-A	Homo	INTERGENIC
SBS	Chr2	9865744	C-T	Hetero	INTERGENIC
SBS	Chr2	13928905	C-T	Hetero	INTERGENIC
SBS	Chr2	15087032	G-C	Homo	INTERGENIC
SBS	Chr3	364045	G-T	Hetero	INTERGENIC
SBS	Chr3	12011781	A-G	Hetero	INTERGENIC
SBS	Chr3	26871345	G-A	Homo	INTERGENIC
SBS	Chr3	27755565	C-T	Homo	INTERGENIC
SBS	Chr3	29077788	C-T	Hetero	INTERGENIC
SBS	Chr3	32560730	T-G	Hetero	INTERGENIC
SBS	Chr4	4698457	A-G	Hetero	INTERGENIC
SBS	Chr4	17493224	T-A	Hetero	INTERGENIC
SBS	Chr4	20480409	G-A	Hetero	INTERGENIC
SBS	Chr4	27381176	C-T	Homo	INTERGENIC
SBS	Chr7	16982546	C-T	Hetero	INTRON
SBS	Chr7	20113718	C-T	Homo	INTERGENIC
SBS	Chr8	3342169	C-T	Homo	UTR_3_PRIME
SBS	Chr8	8077316	G-T	Hetero	INTRON
SBS	Chr8	17090229	C-T	Hetero	INTERGENIC
SBS	Chr8	21539621	T-G	Hetero	INTERGENIC
SBS	Chr9	2045875	A-T	Homo	INTERGENIC
SBS	Chr9	3194709	C-G	Homo	INTERGENIC
SBS	Chr9	12228329	G-A	Homo	INTERGENIC
SBS	Chr10	9476701	G-A	Hetero	INTERGENIC
SBS	Chr11	1424933	C-G	Hetero	INTERGENIC
SBS	Chr11	24543887	A-G	Homo	INTERGENIC
SBS	Chr12	8366187	C-A	Hetero	INTERGENIC
SBS	Chr12	11106188	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	769785	769789	4
Deletion	Chr4	1825659	1825661	2
Deletion	Chr6	1930900	1930906	6
Deletion	Chr10	2182883	2182885	2
Deletion	Chr4	2884620	2884625	5
Deletion	Chr11	4162142	4162145	3	OsKitaake11g056500
Deletion	Chr7	4732247	4732257	10
Deletion	Chr3	6200001	6211000	10999
Deletion	Chr2	6913125	6913141	16	OsKitaake02g093900
Deletion	Chr1	7065831	7065845	14
Deletion	Chr6	8654896	8654908	12
Deletion	Chr8	9846607	9846608	1
Deletion	Chr12	10297203	10297208	5
Deletion	Chr1	11712485	11712498	13
Deletion	Chr3	17826514	17826518	4	OsKitaake03g218400
Deletion	Chr1	18673192	18673207	15
Deletion	Chr2	19854978	19854986	8
Deletion	Chr4	20350699	20350703	4
Deletion	Chr7	20817644	20817646	2
Deletion	Chr2	21174064	21174066	2
Deletion	Chr5	23688141	23688145	4
Deletion	Chr1	26025397	26025398	1
Deletion	Chr12	26727781	26727787	6
Deletion	Chr1	28043425	28043430	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	2761033	2792500	OsKitaake11g038800
Inversion	Chr11	2761035	2792499	OsKitaake11g038800
Inversion	Chr5	12229411	12245529

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes