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Mutant Information

Mutant Name	FN2223-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2223-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 64

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1682790 A-T Hetero INTRON
SBS Chr1 7101119 C-T Hetero INTRON
SBS Chr1 11011812 G-A Hetero INTERGENIC
SBS Chr1 13349335 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g156100
SBS Chr1 15159627 C-T Homo INTRON
SBS Chr1 20483706 T-A Homo INTERGENIC
SBS Chr1 21939738 T-G Homo INTERGENIC
SBS Chr2 1792945 C-T Hetero INTRON
SBS Chr2 4145040 G-A Hetero INTERGENIC
SBS Chr2 22313172 T-C Hetero INTERGENIC
SBS Chr3 4895808 G-A Hetero INTRON
SBS Chr3 16344421 G-T Homo INTERGENIC
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr3 17228622 G-A Homo INTERGENIC
SBS Chr3 19365526 G-C Hetero INTERGENIC
SBS Chr3 24299963 G-A Homo INTERGENIC
SBS Chr4 7287476 G-A Homo INTERGENIC
SBS Chr4 8822355 C-T Hetero INTERGENIC
SBS Chr4 15840103 G-A Hetero INTERGENIC
SBS Chr4 20060294 G-A Hetero INTRON
SBS Chr4 24685514 G-A Hetero UTR_3_PRIME
SBS Chr4 26297239 G-A Hetero INTERGENIC
SBS Chr5 8927803 G-T Homo INTERGENIC
SBS Chr5 9215434 G-A Hetero INTERGENIC
SBS Chr5 15230313 G-C Hetero INTERGENIC
SBS Chr5 23016268 C-T Hetero INTERGENIC
SBS Chr6 971565 C-T Hetero INTERGENIC
SBS Chr6 971573 A-T Hetero INTERGENIC
SBS Chr6 3321078 A-G Hetero INTERGENIC
SBS Chr6 4516466 G-A Hetero UTR_3_PRIME
SBS Chr6 6925693 G-T Homo UTR_3_PRIME
SBS Chr6 20880921 A-T Homo INTERGENIC
SBS Chr6 20880922 C-T Homo INTERGENIC
SBS Chr6 27634933 C-T Hetero INTERGENIC
SBS Chr7 665471 A-T Hetero INTERGENIC
SBS Chr7 1136746 A-G Hetero INTERGENIC
SBS Chr7 10414213 G-A Hetero INTERGENIC
SBS Chr7 12110079 G-A Hetero INTERGENIC
SBS Chr7 18633036 G-A Hetero INTERGENIC
SBS Chr8 3760744 A-G Hetero INTERGENIC
SBS Chr8 13213197 T-A Hetero INTERGENIC
SBS Chr9 1379469 A-G Hetero INTERGENIC
SBS Chr9 4739713 A-T Hetero INTERGENIC
SBS Chr9 8879750 G-A Hetero INTERGENIC
SBS Chr10 1850387 T-C Hetero SPLICE_SITE_REGION
SBS Chr10 1889395 A-G Hetero INTERGENIC
SBS Chr10 1956138 G-C Hetero INTERGENIC
SBS Chr10 4091872 C-T Hetero INTERGENIC
SBS Chr10 9350842 G-T Hetero INTERGENIC
SBS Chr10 10549568 G-A Hetero INTERGENIC
SBS Chr10 11268270 T-A Hetero INTRON
SBS Chr10 13332781 C-T Hetero INTERGENIC
SBS Chr11 5346872 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g066532
SBS Chr11 7085647 C-A Hetero INTERGENIC
SBS Chr11 8680967 C-T Hetero INTRON
SBS Chr11 9851729 G-A Hetero INTERGENIC
SBS Chr11 10885962 T-G Hetero INTERGENIC
SBS Chr11 11467674 G-A Hetero INTERGENIC
SBS Chr11 12658743 C-T Hetero INTERGENIC
SBS Chr11 16086001 G-C Hetero INTERGENIC
SBS Chr11 18377165 G-A Hetero INTERGENIC
SBS Chr11 19433885 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g151700
SBS Chr11 24197639 C-G Hetero SYNONYMOUS_CODING
SBS Chr12 17087028 A-C Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 601745 601755 10
Deletion Chr12 2003141 2003144 3
Deletion Chr8 3759773 3759778 5
Deletion Chr1 4900902 4900905 3
Deletion Chr4 5811859 5811860 1
Deletion Chr7 14153359 14153360 1
Deletion Chr3 16182927 16182947 20
Deletion Chr9 16454495 16454505 10
Deletion Chr9 18438975 18438984 9
Deletion Chr10 19559612 19559614 2
Deletion Chr6 19948472 19948473 1
Deletion Chr7 21126788 21126793 5
Deletion Chr1 21146175 21146177 2
Deletion Chr3 21829804 21829812 8
Deletion Chr6 22540713 22540732 19
Deletion Chr3 23309783 23309785 2 OsKitaake03g250900
Deletion Chr7 26260199 26260209 10
Deletion Chr2 26543567 26543587 20
Deletion Chr7 26603968 26603981 13
Deletion Chr7 26675737 26675752 15
Deletion Chr2 27526751 27526753 2
Deletion Chr8 29118497 29118499 2
Deletion Chr3 31479229 31479231 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 19379875 19379878 2
Insertion Chr7 25932240 25932243 2
Insertion Chr8 11673890 11673893 2
Insertion Chr11 25036464 25036469 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1682790	A-T	Hetero	INTRON
SBS	Chr1	7101119	C-T	Hetero	INTRON
SBS	Chr1	11011812	G-A	Hetero	INTERGENIC
SBS	Chr1	13349335	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g156100
SBS	Chr1	15159627	C-T	Homo	INTRON
SBS	Chr1	20483706	T-A	Homo	INTERGENIC
SBS	Chr1	21939738	T-G	Homo	INTERGENIC
SBS	Chr2	1792945	C-T	Hetero	INTRON
SBS	Chr2	4145040	G-A	Hetero	INTERGENIC
SBS	Chr2	22313172	T-C	Hetero	INTERGENIC
SBS	Chr3	4895808	G-A	Hetero	INTRON
SBS	Chr3	16344421	G-T	Homo	INTERGENIC
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr3	17228622	G-A	Homo	INTERGENIC
SBS	Chr3	19365526	G-C	Hetero	INTERGENIC
SBS	Chr3	24299963	G-A	Homo	INTERGENIC
SBS	Chr4	7287476	G-A	Homo	INTERGENIC
SBS	Chr4	8822355	C-T	Hetero	INTERGENIC
SBS	Chr4	15840103	G-A	Hetero	INTERGENIC
SBS	Chr4	20060294	G-A	Hetero	INTRON
SBS	Chr4	24685514	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	26297239	G-A	Hetero	INTERGENIC
SBS	Chr5	8927803	G-T	Homo	INTERGENIC
SBS	Chr5	9215434	G-A	Hetero	INTERGENIC
SBS	Chr5	15230313	G-C	Hetero	INTERGENIC
SBS	Chr5	23016268	C-T	Hetero	INTERGENIC
SBS	Chr6	971565	C-T	Hetero	INTERGENIC
SBS	Chr6	971573	A-T	Hetero	INTERGENIC
SBS	Chr6	3321078	A-G	Hetero	INTERGENIC
SBS	Chr6	4516466	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	6925693	G-T	Homo	UTR_3_PRIME
SBS	Chr6	20880921	A-T	Homo	INTERGENIC
SBS	Chr6	20880922	C-T	Homo	INTERGENIC
SBS	Chr6	27634933	C-T	Hetero	INTERGENIC
SBS	Chr7	665471	A-T	Hetero	INTERGENIC
SBS	Chr7	1136746	A-G	Hetero	INTERGENIC
SBS	Chr7	10414213	G-A	Hetero	INTERGENIC
SBS	Chr7	12110079	G-A	Hetero	INTERGENIC
SBS	Chr7	18633036	G-A	Hetero	INTERGENIC
SBS	Chr8	3760744	A-G	Hetero	INTERGENIC
SBS	Chr8	13213197	T-A	Hetero	INTERGENIC
SBS	Chr9	1379469	A-G	Hetero	INTERGENIC
SBS	Chr9	4739713	A-T	Hetero	INTERGENIC
SBS	Chr9	8879750	G-A	Hetero	INTERGENIC
SBS	Chr10	1850387	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr10	1889395	A-G	Hetero	INTERGENIC
SBS	Chr10	1956138	G-C	Hetero	INTERGENIC
SBS	Chr10	4091872	C-T	Hetero	INTERGENIC
SBS	Chr10	9350842	G-T	Hetero	INTERGENIC
SBS	Chr10	10549568	G-A	Hetero	INTERGENIC
SBS	Chr10	11268270	T-A	Hetero	INTRON
SBS	Chr10	13332781	C-T	Hetero	INTERGENIC
SBS	Chr11	5346872	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g066532
SBS	Chr11	7085647	C-A	Hetero	INTERGENIC
SBS	Chr11	8680967	C-T	Hetero	INTRON
SBS	Chr11	9851729	G-A	Hetero	INTERGENIC
SBS	Chr11	10885962	T-G	Hetero	INTERGENIC
SBS	Chr11	11467674	G-A	Hetero	INTERGENIC
SBS	Chr11	12658743	C-T	Hetero	INTERGENIC
SBS	Chr11	16086001	G-C	Hetero	INTERGENIC
SBS	Chr11	18377165	G-A	Hetero	INTERGENIC
SBS	Chr11	19433885	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g151700
SBS	Chr11	24197639	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	17087028	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	601745	601755	10
Deletion	Chr12	2003141	2003144	3
Deletion	Chr8	3759773	3759778	5
Deletion	Chr1	4900902	4900905	3
Deletion	Chr4	5811859	5811860	1
Deletion	Chr7	14153359	14153360	1
Deletion	Chr3	16182927	16182947	20
Deletion	Chr9	16454495	16454505	10
Deletion	Chr9	18438975	18438984	9
Deletion	Chr10	19559612	19559614	2
Deletion	Chr6	19948472	19948473	1
Deletion	Chr7	21126788	21126793	5
Deletion	Chr1	21146175	21146177	2
Deletion	Chr3	21829804	21829812	8
Deletion	Chr6	22540713	22540732	19
Deletion	Chr3	23309783	23309785	2	OsKitaake03g250900
Deletion	Chr7	26260199	26260209	10
Deletion	Chr2	26543567	26543587	20
Deletion	Chr7	26603968	26603981	13
Deletion	Chr7	26675737	26675752	15
Deletion	Chr2	27526751	27526753	2
Deletion	Chr8	29118497	29118499	2
Deletion	Chr3	31479229	31479231	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes