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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN2224-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2224-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5356339 G-C Homo INTRON
SBS Chr1 14503054 C-T Hetero INTERGENIC
SBS Chr1 15757182 G-C Hetero INTERGENIC
SBS Chr1 20890677 C-T Homo INTERGENIC
SBS Chr1 43362027 G-T Hetero INTERGENIC
SBS Chr1 44047749 T-C Homo INTERGENIC
SBS Chr2 6445989 A-T Homo INTERGENIC
SBS Chr2 13540341 G-A Homo INTERGENIC
SBS Chr2 23575042 G-A Homo SYNONYMOUS_CODING
SBS Chr2 26193472 C-G Homo INTRON
SBS Chr2 30439910 T-C Hetero INTERGENIC
SBS Chr3 34329354 T-A Hetero INTRON
SBS Chr4 23461985 T-C Hetero INTERGENIC
SBS Chr4 35607731 T-G Homo NON_SYNONYMOUS_CODING OsKitaake04g303900
SBS Chr5 4913815 C-G Hetero INTERGENIC
SBS Chr6 11258466 C-T Homo UTR_5_PRIME
SBS Chr6 15778830 T-C Hetero INTERGENIC
SBS Chr6 29836317 G-C Hetero UTR_3_PRIME
SBS Chr7 4358169 G-A Hetero UTR_3_PRIME
SBS Chr7 8510712 G-C Hetero INTERGENIC
SBS Chr7 9969445 C-T Homo INTRON
SBS Chr7 9969470 G-C Hetero INTRON
SBS Chr8 1183637 G-A Hetero INTERGENIC
SBS Chr8 6348857 G-C Hetero UTR_3_PRIME
SBS Chr8 28637556 C-T Hetero INTERGENIC
SBS Chr11 15657632 T-C Hetero INTERGENIC
SBS Chr11 20667713 A-T Hetero INTERGENIC
SBS Chr12 4425770 T-G Hetero INTERGENIC
SBS Chr12 11243436 G-A Hetero INTERGENIC
SBS Chr12 16795180 A-G Homo INTERGENIC
SBS Chr12 17680250 C-T Homo INTERGENIC
SBS Chr12 21826217 C-T Homo INTERGENIC
SBS Chr12 25644988 G-A Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1255070 1255071 1
Deletion Chr6 1741305 1741306 1
Deletion Chr5 2610912 2610919 7
Deletion Chr2 2890828 2890830 2
Deletion Chr7 4138655 4138658 3
Deletion Chr7 8362110 8362111 1
Deletion Chr7 8389916 8389917 1
Deletion Chr7 10388001 10607000 218999 3
Deletion Chr1 10643001 10668000 24999 4
Deletion Chr12 11658160 11658314 154
Deletion Chr10 12429261 12429267 6
Deletion Chr12 17922338 17922340 2
Deletion Chr7 18778555 18778558 3 OsKitaake07g152900
Deletion Chr6 21939844 21939854 10
Deletion Chr2 23106389 23106399 10 OsKitaake02g226300
Deletion Chr12 23411707 23411709 2
Deletion Chr4 23706001 23763000 56999 6
Deletion Chr2 24087865 24087878 13
Deletion Chr4 24784051 24784056 5 OsKitaake04g163700
Deletion Chr11 26554716 26554721 5
Deletion Chr7 28440001 28457000 16999 4
Deletion Chr1 32591604 32591607 3
Deletion Chr3 35730858 35730859 1
Deletion Chr3 37529263 37529264 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14609836 14609842 5
Insertion Chr1 43985976 43985979 2
Insertion Chr2 29431343 29431348 4
Insertion Chr9 16308367 16308370 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 19165258 19306435 OsKitaake11g148800
Inversion Chr11 24252174 24405730
Inversion Chr11 24405735 24413457

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 22083017 Chr9 13045244 OsKitaake09g086500
Translocation Chr12 22083093 Chr9 13044338

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5356339	G-C	Homo	INTRON
SBS	Chr1	14503054	C-T	Hetero	INTERGENIC
SBS	Chr1	15757182	G-C	Hetero	INTERGENIC
SBS	Chr1	20890677	C-T	Homo	INTERGENIC
SBS	Chr1	43362027	G-T	Hetero	INTERGENIC
SBS	Chr1	44047749	T-C	Homo	INTERGENIC
SBS	Chr2	6445989	A-T	Homo	INTERGENIC
SBS	Chr2	13540341	G-A	Homo	INTERGENIC
SBS	Chr2	23575042	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	26193472	C-G	Homo	INTRON
SBS	Chr2	30439910	T-C	Hetero	INTERGENIC
SBS	Chr3	34329354	T-A	Hetero	INTRON
SBS	Chr4	23461985	T-C	Hetero	INTERGENIC
SBS	Chr4	35607731	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g303900
SBS	Chr5	4913815	C-G	Hetero	INTERGENIC
SBS	Chr6	11258466	C-T	Homo	UTR_5_PRIME
SBS	Chr6	15778830	T-C	Hetero	INTERGENIC
SBS	Chr6	29836317	G-C	Hetero	UTR_3_PRIME
SBS	Chr7	4358169	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	8510712	G-C	Hetero	INTERGENIC
SBS	Chr7	9969445	C-T	Homo	INTRON
SBS	Chr7	9969470	G-C	Hetero	INTRON
SBS	Chr8	1183637	G-A	Hetero	INTERGENIC
SBS	Chr8	6348857	G-C	Hetero	UTR_3_PRIME
SBS	Chr8	28637556	C-T	Hetero	INTERGENIC
SBS	Chr11	15657632	T-C	Hetero	INTERGENIC
SBS	Chr11	20667713	A-T	Hetero	INTERGENIC
SBS	Chr12	4425770	T-G	Hetero	INTERGENIC
SBS	Chr12	11243436	G-A	Hetero	INTERGENIC
SBS	Chr12	16795180	A-G	Homo	INTERGENIC
SBS	Chr12	17680250	C-T	Homo	INTERGENIC
SBS	Chr12	21826217	C-T	Homo	INTERGENIC
SBS	Chr12	25644988	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1255070	1255071	1
Deletion	Chr6	1741305	1741306	1
Deletion	Chr5	2610912	2610919	7
Deletion	Chr2	2890828	2890830	2
Deletion	Chr7	4138655	4138658	3
Deletion	Chr7	8362110	8362111	1
Deletion	Chr7	8389916	8389917	1
Deletion	Chr7	10388001	10607000	218999	3
Deletion	Chr1	10643001	10668000	24999	4
Deletion	Chr12	11658160	11658314	154
Deletion	Chr10	12429261	12429267	6
Deletion	Chr12	17922338	17922340	2
Deletion	Chr7	18778555	18778558	3	OsKitaake07g152900
Deletion	Chr6	21939844	21939854	10
Deletion	Chr2	23106389	23106399	10	OsKitaake02g226300
Deletion	Chr12	23411707	23411709	2
Deletion	Chr4	23706001	23763000	56999	6
Deletion	Chr2	24087865	24087878	13
Deletion	Chr4	24784051	24784056	5	OsKitaake04g163700
Deletion	Chr11	26554716	26554721	5
Deletion	Chr7	28440001	28457000	16999	4
Deletion	Chr1	32591604	32591607	3
Deletion	Chr3	35730858	35730859	1
Deletion	Chr3	37529263	37529264	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	19165258	19306435	OsKitaake11g148800
Inversion	Chr11	24252174	24405730
Inversion	Chr11	24405735	24413457

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes