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| Mutant Information |
|---|
| Mutant Name | FN2226-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2226-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12779961 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 19833300 | T-G | Hetero | INTRON | |
| SBS | Chr1 | 20420228 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21450488 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 31235089 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 35938446 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 11546061 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 11546067 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 26671351 | A-C | Hetero | INTRON | |
| SBS | Chr2 | 28770911 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 24657739 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 33867895 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 36291491 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14565645 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 15743217 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 23071578 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 978790 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9336987 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 21837377 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 28722053 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 4678771 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 6298241 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 12776461 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20255239 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr7 | 27863826 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 27863827 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 14166287 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 25287004 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 1426711 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 2486083 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 3618656 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5370375 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 16607440 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 21767390 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 24691691 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 26190844 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 2171436 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 3632733 | T-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 126363 | 126365 | 2 | |
| Deletion | Chr2 | 812131 | 812139 | 8 | OsKitaake02g011400 |
| Deletion | Chr1 | 4702839 | 4702843 | 4 | |
| Deletion | Chr4 | 5411727 | 5411730 | 3 | |
| Deletion | Chr12 | 8529144 | 8529151 | 7 | |
| Deletion | Chr7 | 11545754 | 11545764 | 10 | OsKitaake07g107500 |
| Deletion | Chr9 | 12363564 | 12363578 | 14 | |
| Deletion | Chr1 | 18380001 | 18393000 | 12999 | 3 |
| Deletion | Chr9 | 22020887 | 22020888 | 1 | |
| Deletion | Chr5 | 22471238 | 22471239 | 1 | |
| Deletion | Chr4 | 27941448 | 27941458 | 10 | |
| Deletion | Chr4 | 29776026 | 29776030 | 4 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 5179549 | 5179552 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 15299884 | Chr1 | 1514334 | |
| Translocation | Chr3 | 17815254 | Chr2 | 12674967 | OsKitaake03g218300 |
| Translocation | Chr3 | 17816629 | Chr2 | 12674963 |