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Mutant Information

Mutant Name	FN2229-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2229-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16888194 T-A Homo INTERGENIC
SBS Chr1 33119468 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g338000
SBS Chr1 33119469 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g338000
SBS Chr2 2780652 C-A Homo INTERGENIC
SBS Chr2 15199311 G-A Hetero INTERGENIC
SBS Chr2 15385008 G-A Hetero INTERGENIC
SBS Chr3 16073176 A-G Hetero INTERGENIC
SBS Chr3 16347877 G-A Hetero INTERGENIC
SBS Chr3 28147618 T-A Homo INTERGENIC
SBS Chr3 36833624 C-T Hetero INTERGENIC
SBS Chr4 13152779 T-A Hetero INTERGENIC
SBS Chr4 21927396 T-G Homo INTERGENIC
SBS Chr4 25768879 T-A Hetero INTRON
SBS Chr4 25820652 C-A Hetero UTR_5_PRIME
SBS Chr4 34314231 A-G Hetero INTERGENIC
SBS Chr4 35182968 A-G Hetero INTERGENIC
SBS Chr4 35906861 G-A Hetero INTERGENIC
SBS Chr4 35951786 T-A Homo INTERGENIC
SBS Chr5 869886 G-T Homo INTERGENIC
SBS Chr5 11781345 G-C Homo INTERGENIC
SBS Chr5 15051317 T-A Homo INTERGENIC
SBS Chr6 12521300 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g133650
SBS Chr7 10404372 G-A Homo INTERGENIC
SBS Chr7 10425511 C-G Hetero INTERGENIC
SBS Chr7 18130298 C-T Hetero INTERGENIC
SBS Chr7 25991180 T-G Hetero INTERGENIC
SBS Chr8 22960332 G-C Homo INTERGENIC
SBS Chr9 16102314 G-A Hetero INTERGENIC
SBS Chr10 4470008 A-G Hetero INTERGENIC
SBS Chr10 11740514 G-A Hetero INTERGENIC
SBS Chr10 16228428 C-T Hetero INTERGENIC
SBS Chr11 2028425 A-G Hetero INTERGENIC
SBS Chr11 8792268 C-A Hetero INTERGENIC
SBS Chr11 12857605 G-A Homo INTERGENIC
SBS Chr11 16807153 G-A Hetero INTERGENIC
SBS Chr12 8675804 T-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 187950 187964 14
Deletion Chr11 237001 267000 29999 5
Deletion Chr10 1700902 1700923 21
Deletion Chr11 2008642 2008645 3
Deletion Chr11 2865398 2865405 7
Deletion Chr11 4590024 4590034 10
Deletion Chr6 6025066 6025070 4
Deletion Chr12 7459060 7459072 12
Deletion Chr9 10866856 10866863 7
Deletion Chr5 13095208 13095209 1
Deletion Chr12 13912857 13912858 1
Deletion Chr1 14341741 14341748 7
Deletion Chr4 14444992 14444994 2
Deletion Chr3 19710119 19710121 2
Deletion Chr9 19991864 19991866 2
Deletion Chr10 20497190 20497196 6
Deletion Chr4 23022839 23022852 13
Deletion Chr7 27791923 27791936 13
Deletion Chr2 32498196 32498230 34
Deletion Chr1 35968272 35968273 1
Deletion Chr3 37513087 37513108 21

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36723632 36723635 2
Insertion Chr2 8204641 8204645 3
Insertion Chr7 28346703 28346706 2
Insertion Chr10 283975 283985 9
Insertion Chr10 12871625 12871628 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 1694144 2388354 OsKitaake09g012800
Inversion Chr9 1694152 2388356 OsKitaake09g012800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16888194	T-A	Homo	INTERGENIC
SBS	Chr1	33119468	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g338000
SBS	Chr1	33119469	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g338000
SBS	Chr2	2780652	C-A	Homo	INTERGENIC
SBS	Chr2	15199311	G-A	Hetero	INTERGENIC
SBS	Chr2	15385008	G-A	Hetero	INTERGENIC
SBS	Chr3	16073176	A-G	Hetero	INTERGENIC
SBS	Chr3	16347877	G-A	Hetero	INTERGENIC
SBS	Chr3	28147618	T-A	Homo	INTERGENIC
SBS	Chr3	36833624	C-T	Hetero	INTERGENIC
SBS	Chr4	13152779	T-A	Hetero	INTERGENIC
SBS	Chr4	21927396	T-G	Homo	INTERGENIC
SBS	Chr4	25768879	T-A	Hetero	INTRON
SBS	Chr4	25820652	C-A	Hetero	UTR_5_PRIME
SBS	Chr4	34314231	A-G	Hetero	INTERGENIC
SBS	Chr4	35182968	A-G	Hetero	INTERGENIC
SBS	Chr4	35906861	G-A	Hetero	INTERGENIC
SBS	Chr4	35951786	T-A	Homo	INTERGENIC
SBS	Chr5	869886	G-T	Homo	INTERGENIC
SBS	Chr5	11781345	G-C	Homo	INTERGENIC
SBS	Chr5	15051317	T-A	Homo	INTERGENIC
SBS	Chr6	12521300	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g133650
SBS	Chr7	10404372	G-A	Homo	INTERGENIC
SBS	Chr7	10425511	C-G	Hetero	INTERGENIC
SBS	Chr7	18130298	C-T	Hetero	INTERGENIC
SBS	Chr7	25991180	T-G	Hetero	INTERGENIC
SBS	Chr8	22960332	G-C	Homo	INTERGENIC
SBS	Chr9	16102314	G-A	Hetero	INTERGENIC
SBS	Chr10	4470008	A-G	Hetero	INTERGENIC
SBS	Chr10	11740514	G-A	Hetero	INTERGENIC
SBS	Chr10	16228428	C-T	Hetero	INTERGENIC
SBS	Chr11	2028425	A-G	Hetero	INTERGENIC
SBS	Chr11	8792268	C-A	Hetero	INTERGENIC
SBS	Chr11	12857605	G-A	Homo	INTERGENIC
SBS	Chr11	16807153	G-A	Hetero	INTERGENIC
SBS	Chr12	8675804	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	187950	187964	14
Deletion	Chr11	237001	267000	29999	5
Deletion	Chr10	1700902	1700923	21
Deletion	Chr11	2008642	2008645	3
Deletion	Chr11	2865398	2865405	7
Deletion	Chr11	4590024	4590034	10
Deletion	Chr6	6025066	6025070	4
Deletion	Chr12	7459060	7459072	12
Deletion	Chr9	10866856	10866863	7
Deletion	Chr5	13095208	13095209	1
Deletion	Chr12	13912857	13912858	1
Deletion	Chr1	14341741	14341748	7
Deletion	Chr4	14444992	14444994	2
Deletion	Chr3	19710119	19710121	2
Deletion	Chr9	19991864	19991866	2
Deletion	Chr10	20497190	20497196	6
Deletion	Chr4	23022839	23022852	13
Deletion	Chr7	27791923	27791936	13
Deletion	Chr2	32498196	32498230	34
Deletion	Chr1	35968272	35968273	1
Deletion	Chr3	37513087	37513108	21

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1694144	2388354	OsKitaake09g012800
Inversion	Chr9	1694152	2388356	OsKitaake09g012800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes