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Mutant Information

Mutant Name	FN2230-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2230-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17434969 T-A Hetero INTERGENIC
SBS Chr1 17991104 G-C Hetero INTERGENIC
SBS Chr1 24910672 G-A Hetero INTERGENIC
SBS Chr1 29670715 G-A Hetero INTERGENIC
SBS Chr1 36771418 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g391000
SBS Chr2 4799005 G-T Hetero SYNONYMOUS_CODING
SBS Chr2 4799024 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g066400
SBS Chr3 17174584 A-T Hetero INTERGENIC
SBS Chr3 19816554 T-C Hetero INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 28507837 A-T Homo UTR_3_PRIME
SBS Chr3 28507838 C-T Homo UTR_3_PRIME
SBS Chr3 29138032 G-A Homo INTERGENIC
SBS Chr3 34327630 G-C Homo INTERGENIC
SBS Chr3 37691562 G-A Hetero INTERGENIC
SBS Chr4 4885377 G-A Hetero INTERGENIC
SBS Chr4 19931767 A-T Hetero INTERGENIC
SBS Chr4 22325600 A-C Hetero INTERGENIC
SBS Chr4 23083630 C-A Hetero INTERGENIC
SBS Chr5 3731713 C-T Hetero INTRON
SBS Chr5 9225573 T-A Homo INTERGENIC
SBS Chr6 4193355 A-G Hetero INTRON
SBS Chr6 27502696 T-C Homo INTRON
SBS Chr7 11941047 G-A Hetero INTERGENIC
SBS Chr8 8270103 A-T Hetero INTERGENIC
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr8 17334911 G-A Hetero INTERGENIC
SBS Chr8 21834702 A-G Hetero INTERGENIC
SBS Chr9 14686080 A-C Hetero INTERGENIC
SBS Chr9 15105510 C-A Homo NON_SYNONYMOUS_CODING OsKitaake09g104800
SBS Chr9 15363368 C-T Hetero INTERGENIC
SBS Chr9 15363369 C-T Hetero INTERGENIC
SBS Chr10 1986158 A-G Hetero INTERGENIC
SBS Chr10 16548885 T-G Hetero INTERGENIC
SBS Chr11 18902118 T-A Hetero INTERGENIC
SBS Chr11 20170841 C-T Hetero INTERGENIC
SBS Chr11 26966774 A-G Hetero INTERGENIC
SBS Chr11 27388454 A-G Hetero INTERGENIC
SBS Chr12 9672891 A-G Hetero INTERGENIC
SBS Chr12 13949097 G-A Hetero INTERGENIC
SBS Chr12 14595556 A-G Hetero INTERGENIC
SBS Chr12 15066793 C-T Hetero INTERGENIC
SBS Chr12 25829795 T-C Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 258666 258669 3
Deletion Chr1 3226108 3226200 92
Deletion Chr5 4992120 4992121 1
Deletion Chr1 5593693 5593695 2
Deletion Chr11 6308849 6308859 10
Deletion Chr8 6495709 6495711 2
Deletion Chr2 7644368 7644369 1
Deletion Chr12 8415373 8415375 2
Deletion Chr11 8482708 8482712 4
Deletion Chr7 8946109 8946113 4
Deletion Chr11 8964600 8964610 10
Deletion Chr10 11331254 11331256 2
Deletion Chr1 11748258 11748259 1
Deletion Chr2 13541175 13541193 18
Deletion Chr2 13607768 13607769 1
Deletion Chr9 14873001 15219000 345999 40
Deletion Chr7 15113255 15113257 2
Deletion Chr9 15223001 15366000 142999 22
Deletion Chr6 19370011 19370012 1
Deletion Chr10 21214665 21214667 2
Deletion Chr8 23731498 23731499 1
Deletion Chr5 24101191 24101195 4
Deletion Chr2 29047213 29047230 17
Deletion Chr3 37459040 37459067 27 OsKitaake03g420300

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15607046 15607049 2
Insertion Chr4 29716800 29716804 3
Insertion Chr8 11655385 11655388 2
Insertion Chr9 3270865 3270873 7

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 13024733 Chr3 13947221
Translocation Chr4 13024736 Chr3 13947074
Translocation Chr9 14872409 Chr7 6597515
Translocation Chr9 15363079 Chr7 6595159
Translocation Chr11 17778992 Chr3 3381170 OsKitaake03g047800
Translocation Chr3 22718731 Chr2 7801447 OsKitaake02g101900
Translocation Chr3 22728847 Chr2 7801438 OsKitaake02g101900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17434969	T-A	Hetero	INTERGENIC
SBS	Chr1	17991104	G-C	Hetero	INTERGENIC
SBS	Chr1	24910672	G-A	Hetero	INTERGENIC
SBS	Chr1	29670715	G-A	Hetero	INTERGENIC
SBS	Chr1	36771418	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g391000
SBS	Chr2	4799005	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	4799024	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g066400
SBS	Chr3	17174584	A-T	Hetero	INTERGENIC
SBS	Chr3	19816554	T-C	Hetero	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	28507837	A-T	Homo	UTR_3_PRIME
SBS	Chr3	28507838	C-T	Homo	UTR_3_PRIME
SBS	Chr3	29138032	G-A	Homo	INTERGENIC
SBS	Chr3	34327630	G-C	Homo	INTERGENIC
SBS	Chr3	37691562	G-A	Hetero	INTERGENIC
SBS	Chr4	4885377	G-A	Hetero	INTERGENIC
SBS	Chr4	19931767	A-T	Hetero	INTERGENIC
SBS	Chr4	22325600	A-C	Hetero	INTERGENIC
SBS	Chr4	23083630	C-A	Hetero	INTERGENIC
SBS	Chr5	3731713	C-T	Hetero	INTRON
SBS	Chr5	9225573	T-A	Homo	INTERGENIC
SBS	Chr6	4193355	A-G	Hetero	INTRON
SBS	Chr6	27502696	T-C	Homo	INTRON
SBS	Chr7	11941047	G-A	Hetero	INTERGENIC
SBS	Chr8	8270103	A-T	Hetero	INTERGENIC
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr8	17334911	G-A	Hetero	INTERGENIC
SBS	Chr8	21834702	A-G	Hetero	INTERGENIC
SBS	Chr9	14686080	A-C	Hetero	INTERGENIC
SBS	Chr9	15105510	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g104800
SBS	Chr9	15363368	C-T	Hetero	INTERGENIC
SBS	Chr9	15363369	C-T	Hetero	INTERGENIC
SBS	Chr10	1986158	A-G	Hetero	INTERGENIC
SBS	Chr10	16548885	T-G	Hetero	INTERGENIC
SBS	Chr11	18902118	T-A	Hetero	INTERGENIC
SBS	Chr11	20170841	C-T	Hetero	INTERGENIC
SBS	Chr11	26966774	A-G	Hetero	INTERGENIC
SBS	Chr11	27388454	A-G	Hetero	INTERGENIC
SBS	Chr12	9672891	A-G	Hetero	INTERGENIC
SBS	Chr12	13949097	G-A	Hetero	INTERGENIC
SBS	Chr12	14595556	A-G	Hetero	INTERGENIC
SBS	Chr12	15066793	C-T	Hetero	INTERGENIC
SBS	Chr12	25829795	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	258666	258669	3
Deletion	Chr1	3226108	3226200	92
Deletion	Chr5	4992120	4992121	1
Deletion	Chr1	5593693	5593695	2
Deletion	Chr11	6308849	6308859	10
Deletion	Chr8	6495709	6495711	2
Deletion	Chr2	7644368	7644369	1
Deletion	Chr12	8415373	8415375	2
Deletion	Chr11	8482708	8482712	4
Deletion	Chr7	8946109	8946113	4
Deletion	Chr11	8964600	8964610	10
Deletion	Chr10	11331254	11331256	2
Deletion	Chr1	11748258	11748259	1
Deletion	Chr2	13541175	13541193	18
Deletion	Chr2	13607768	13607769	1
Deletion	Chr9	14873001	15219000	345999	40
Deletion	Chr7	15113255	15113257	2
Deletion	Chr9	15223001	15366000	142999	22
Deletion	Chr6	19370011	19370012	1
Deletion	Chr10	21214665	21214667	2
Deletion	Chr8	23731498	23731499	1
Deletion	Chr5	24101191	24101195	4
Deletion	Chr2	29047213	29047230	17
Deletion	Chr3	37459040	37459067	27	OsKitaake03g420300

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	13024733	Chr3	13947221
Translocation	Chr4	13024736	Chr3	13947074
Translocation	Chr9	14872409	Chr7	6597515
Translocation	Chr9	15363079	Chr7	6595159
Translocation	Chr11	17778992	Chr3	3381170	OsKitaake03g047800
Translocation	Chr3	22718731	Chr2	7801447	OsKitaake02g101900
Translocation	Chr3	22728847	Chr2	7801438	OsKitaake02g101900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes