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Mutant Information

Mutant Name	FN2231-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2231-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8306564 A-G Hetero INTRON
SBS Chr1 12643272 G-A Hetero INTERGENIC
SBS Chr1 17479788 G-A Hetero INTERGENIC
SBS Chr1 21707296 T-G Hetero INTRON
SBS Chr1 21707297 A-G Hetero INTRON
SBS Chr1 25773849 G-A Hetero INTRON
SBS Chr1 30043490 A-T Hetero INTERGENIC
SBS Chr1 36266044 C-T Hetero START_GAINED
SBS Chr1 38690667 C-G Hetero INTRON
SBS Chr2 1221536 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g018600
SBS Chr2 11527478 C-A Homo INTERGENIC
SBS Chr2 23607862 A-G Hetero INTERGENIC
SBS Chr2 29881488 C-T Homo SYNONYMOUS_CODING
SBS Chr3 12955240 A-G Hetero INTERGENIC
SBS Chr3 21779820 T-A Hetero INTRON
SBS Chr3 26471007 A-G Hetero INTERGENIC
SBS Chr3 35304010 T-A Hetero INTERGENIC
SBS Chr3 37003112 G-A Hetero INTRON
SBS Chr3 37003113 G-A Hetero INTRON
SBS Chr4 3534365 G-A Hetero INTERGENIC
SBS Chr4 10468173 G-A Hetero INTERGENIC
SBS Chr4 13289071 C-A Homo INTERGENIC
SBS Chr4 19393202 C-T Homo INTERGENIC
SBS Chr5 12927364 C-T Homo INTERGENIC
SBS Chr5 15040053 G-A Homo INTERGENIC
SBS Chr5 15553608 T-A Homo INTERGENIC
SBS Chr5 26071543 T-C Homo INTERGENIC
SBS Chr6 3064771 T-A Hetero SYNONYMOUS_CODING
SBS Chr7 23820579 A-G Hetero INTRON
SBS Chr7 24726338 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g220600
SBS Chr7 25172205 T-C Hetero INTERGENIC
SBS Chr7 25594325 C-T Hetero INTERGENIC
SBS Chr8 5290534 A-G Hetero INTERGENIC
SBS Chr8 8458367 C-T Hetero INTERGENIC
SBS Chr8 15271837 C-T Hetero INTERGENIC
SBS Chr8 23678976 C-T Homo INTERGENIC
SBS Chr9 9004790 A-C Hetero INTERGENIC
SBS Chr10 3057615 C-T Hetero INTERGENIC
SBS Chr10 9322522 C-T Hetero INTRON
SBS Chr10 11020659 G-A Hetero INTERGENIC
SBS Chr10 11940604 A-G Hetero INTERGENIC
SBS Chr10 13165178 A-G Hetero INTERGENIC
SBS Chr11 4966621 T-C Hetero INTERGENIC
SBS Chr11 9545463 C-G Hetero INTERGENIC
SBS Chr11 13940183 T-C Hetero SYNONYMOUS_CODING
SBS Chr11 16210644 C-T Hetero INTERGENIC
SBS Chr11 24749063 C-T Hetero INTERGENIC
SBS Chr12 3374706 A-G Hetero INTERGENIC
SBS Chr12 13089997 G-A Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3617737 3617738 1
Deletion Chr3 8259983 8259994 11
Deletion Chr2 11984125 11984135 10
Deletion Chr6 12430898 12430899 1
Deletion Chr9 12908165 12908167 2
Deletion Chr10 13065192 13065193 1
Deletion Chr9 18518679 18518680 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13701273 13701276 2
Insertion Chr3 30706662 30706665 2
Insertion Chr3 31845598 31845601 2
Insertion Chr8 28304244 28304247 2
Insertion Chr3 19362193 19362195 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 8721705 9200588 OsKitaake09g051250
Inversion Chr10 16280130 16351915
Inversion Chr10 17296244 17446415

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8721723 Chr7 26166341 OsKitaake09g051250
Translocation Chr9 9200608 Chr7 26158549
Translocation Chr7 10842388 Chr1 19342542
Translocation Chr11 26098158 Chr8 8885195

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8306564	A-G	Hetero	INTRON
SBS	Chr1	12643272	G-A	Hetero	INTERGENIC
SBS	Chr1	17479788	G-A	Hetero	INTERGENIC
SBS	Chr1	21707296	T-G	Hetero	INTRON
SBS	Chr1	21707297	A-G	Hetero	INTRON
SBS	Chr1	25773849	G-A	Hetero	INTRON
SBS	Chr1	30043490	A-T	Hetero	INTERGENIC
SBS	Chr1	36266044	C-T	Hetero	START_GAINED
SBS	Chr1	38690667	C-G	Hetero	INTRON
SBS	Chr2	1221536	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g018600
SBS	Chr2	11527478	C-A	Homo	INTERGENIC
SBS	Chr2	23607862	A-G	Hetero	INTERGENIC
SBS	Chr2	29881488	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	12955240	A-G	Hetero	INTERGENIC
SBS	Chr3	21779820	T-A	Hetero	INTRON
SBS	Chr3	26471007	A-G	Hetero	INTERGENIC
SBS	Chr3	35304010	T-A	Hetero	INTERGENIC
SBS	Chr3	37003112	G-A	Hetero	INTRON
SBS	Chr3	37003113	G-A	Hetero	INTRON
SBS	Chr4	3534365	G-A	Hetero	INTERGENIC
SBS	Chr4	10468173	G-A	Hetero	INTERGENIC
SBS	Chr4	13289071	C-A	Homo	INTERGENIC
SBS	Chr4	19393202	C-T	Homo	INTERGENIC
SBS	Chr5	12927364	C-T	Homo	INTERGENIC
SBS	Chr5	15040053	G-A	Homo	INTERGENIC
SBS	Chr5	15553608	T-A	Homo	INTERGENIC
SBS	Chr5	26071543	T-C	Homo	INTERGENIC
SBS	Chr6	3064771	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	23820579	A-G	Hetero	INTRON
SBS	Chr7	24726338	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g220600
SBS	Chr7	25172205	T-C	Hetero	INTERGENIC
SBS	Chr7	25594325	C-T	Hetero	INTERGENIC
SBS	Chr8	5290534	A-G	Hetero	INTERGENIC
SBS	Chr8	8458367	C-T	Hetero	INTERGENIC
SBS	Chr8	15271837	C-T	Hetero	INTERGENIC
SBS	Chr8	23678976	C-T	Homo	INTERGENIC
SBS	Chr9	9004790	A-C	Hetero	INTERGENIC
SBS	Chr10	3057615	C-T	Hetero	INTERGENIC
SBS	Chr10	9322522	C-T	Hetero	INTRON
SBS	Chr10	11020659	G-A	Hetero	INTERGENIC
SBS	Chr10	11940604	A-G	Hetero	INTERGENIC
SBS	Chr10	13165178	A-G	Hetero	INTERGENIC
SBS	Chr11	4966621	T-C	Hetero	INTERGENIC
SBS	Chr11	9545463	C-G	Hetero	INTERGENIC
SBS	Chr11	13940183	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	16210644	C-T	Hetero	INTERGENIC
SBS	Chr11	24749063	C-T	Hetero	INTERGENIC
SBS	Chr12	3374706	A-G	Hetero	INTERGENIC
SBS	Chr12	13089997	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3617737	3617738	1
Deletion	Chr3	8259983	8259994	11
Deletion	Chr2	11984125	11984135	10
Deletion	Chr6	12430898	12430899	1
Deletion	Chr9	12908165	12908167	2
Deletion	Chr10	13065192	13065193	1
Deletion	Chr9	18518679	18518680	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8721705	9200588	OsKitaake09g051250
Inversion	Chr10	16280130	16351915
Inversion	Chr10	17296244	17446415

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes