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Mutant Information

Mutant Name	FN2232-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2232-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19459119 G-A Homo INTERGENIC
SBS Chr1 23189025 G-A Homo SYNONYMOUS_CODING
SBS Chr1 26187979 T-C Hetero INTRON
SBS Chr1 32427719 T-A Hetero START_GAINED
SBS Chr1 35486727 C-T Hetero INTRON
SBS Chr2 14605677 C-A Hetero INTERGENIC
SBS Chr3 13370043 G-A Homo INTRON
SBS Chr3 19685303 G-A Homo INTERGENIC
SBS Chr3 26137483 G-A Hetero INTERGENIC
SBS Chr3 28470659 A-G Homo INTRON
SBS Chr4 593603 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g004400
SBS Chr4 12881047 G-A Hetero INTERGENIC
SBS Chr4 27619259 A-T Homo UTR_5_PRIME
SBS Chr4 34895598 G-T Hetero INTRON
SBS Chr5 1338938 C-G Homo INTRON
SBS Chr5 2623481 G-A Homo INTRON
SBS Chr5 15371520 C-T Hetero INTERGENIC
SBS Chr5 27611153 T-G Hetero INTRON
SBS Chr6 9915943 A-G Hetero INTERGENIC
SBS Chr6 23724109 A-G Hetero INTERGENIC
SBS Chr6 28667531 A-G Hetero INTERGENIC
SBS Chr7 121485 T-G Homo INTRON
SBS Chr7 28481783 T-C Hetero INTERGENIC
SBS Chr9 11831702 A-C Hetero INTERGENIC
SBS Chr9 19177290 A-C Hetero UTR_3_PRIME
SBS Chr10 7390910 T-A Hetero INTERGENIC
SBS Chr10 9011283 T-A Hetero INTERGENIC
SBS Chr10 14671887 T-A Hetero INTERGENIC
SBS Chr10 23846103 A-G Hetero INTERGENIC
SBS Chr11 17699263 G-A Hetero INTRON
SBS Chr11 17999130 A-C Hetero INTERGENIC
SBS Chr11 18965796 G-A Hetero INTERGENIC
SBS Chr11 19119967 G-T Hetero INTERGENIC
SBS Chr12 6275970 G-A Hetero INTERGENIC
SBS Chr12 12078145 T-C Hetero INTERGENIC
SBS Chr12 16359242 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3241099 3241107 8 OsKitaake05g038500
Deletion Chr10 7893001 8003000 109999 10
Deletion Chr7 18578211 18578242 31
Deletion Chr3 23403340 23403346 6 OsKitaake03g251900
Deletion Chr1 23901929 23901932 3
Deletion Chr5 24798451 24798454 3 OsKitaake05g203600
Deletion Chr3 26131372 26131373 1
Deletion Chr4 26413006 26413022 16
Deletion Chr11 27890493 27890494 1 OsKitaake11g228400
Deletion Chr4 36331533 36331536 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15271084 15271088 3
Insertion Chr5 7817849 7817853 3
Insertion Chr5 22885602 22885605 2
Insertion Chr8 13983035 13983038 2 OsKitaake08g111000
Insertion Chr9 21254170 21254173 2
Insertion Chr10 20276732 20276736 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 7295150 7894224 OsKitaake10g049900
Inversion Chr10 7295157 8002789

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 11513114 Chr2 11773381
Translocation Chr3 11513118 Chr2 11799534 OsKitaake02g134900
Translocation Chr10 14667746 Chr4 34219040
Translocation Chr10 14679751 Chr4 34219047
Translocation Chr10 18882592 Chr2 12195846 OsKitaake02g138300
Translocation Chr10 18882608 Chr2 12195102

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19459119	G-A	Homo	INTERGENIC
SBS	Chr1	23189025	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	26187979	T-C	Hetero	INTRON
SBS	Chr1	32427719	T-A	Hetero	START_GAINED
SBS	Chr1	35486727	C-T	Hetero	INTRON
SBS	Chr2	14605677	C-A	Hetero	INTERGENIC
SBS	Chr3	13370043	G-A	Homo	INTRON
SBS	Chr3	19685303	G-A	Homo	INTERGENIC
SBS	Chr3	26137483	G-A	Hetero	INTERGENIC
SBS	Chr3	28470659	A-G	Homo	INTRON
SBS	Chr4	593603	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g004400
SBS	Chr4	12881047	G-A	Hetero	INTERGENIC
SBS	Chr4	27619259	A-T	Homo	UTR_5_PRIME
SBS	Chr4	34895598	G-T	Hetero	INTRON
SBS	Chr5	1338938	C-G	Homo	INTRON
SBS	Chr5	2623481	G-A	Homo	INTRON
SBS	Chr5	15371520	C-T	Hetero	INTERGENIC
SBS	Chr5	27611153	T-G	Hetero	INTRON
SBS	Chr6	9915943	A-G	Hetero	INTERGENIC
SBS	Chr6	23724109	A-G	Hetero	INTERGENIC
SBS	Chr6	28667531	A-G	Hetero	INTERGENIC
SBS	Chr7	121485	T-G	Homo	INTRON
SBS	Chr7	28481783	T-C	Hetero	INTERGENIC
SBS	Chr9	11831702	A-C	Hetero	INTERGENIC
SBS	Chr9	19177290	A-C	Hetero	UTR_3_PRIME
SBS	Chr10	7390910	T-A	Hetero	INTERGENIC
SBS	Chr10	9011283	T-A	Hetero	INTERGENIC
SBS	Chr10	14671887	T-A	Hetero	INTERGENIC
SBS	Chr10	23846103	A-G	Hetero	INTERGENIC
SBS	Chr11	17699263	G-A	Hetero	INTRON
SBS	Chr11	17999130	A-C	Hetero	INTERGENIC
SBS	Chr11	18965796	G-A	Hetero	INTERGENIC
SBS	Chr11	19119967	G-T	Hetero	INTERGENIC
SBS	Chr12	6275970	G-A	Hetero	INTERGENIC
SBS	Chr12	12078145	T-C	Hetero	INTERGENIC
SBS	Chr12	16359242	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3241099	3241107	8	OsKitaake05g038500
Deletion	Chr10	7893001	8003000	109999	10
Deletion	Chr7	18578211	18578242	31
Deletion	Chr3	23403340	23403346	6	OsKitaake03g251900
Deletion	Chr1	23901929	23901932	3
Deletion	Chr5	24798451	24798454	3	OsKitaake05g203600
Deletion	Chr3	26131372	26131373	1
Deletion	Chr4	26413006	26413022	16
Deletion	Chr11	27890493	27890494	1	OsKitaake11g228400
Deletion	Chr4	36331533	36331536	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	7295150	7894224	OsKitaake10g049900
Inversion	Chr10	7295157	8002789

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes