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Mutant Information

Mutant Name	FN2233-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2233-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1552254 A-G Hetero INTERGENIC
SBS Chr1 3994610 T-A Hetero INTERGENIC
SBS Chr1 11797652 C-T Hetero INTERGENIC
SBS Chr1 24624445 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g237900
SBS Chr1 24974254 A-T Hetero INTERGENIC
SBS Chr1 30568081 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g302500
SBS Chr1 31727286 T-G Hetero INTERGENIC
SBS Chr1 38961428 C-T Hetero INTERGENIC
SBS Chr2 10819472 C-A Homo INTERGENIC
SBS Chr2 13142074 T-C Homo INTERGENIC
SBS Chr2 13489981 T-C Hetero INTERGENIC
SBS Chr2 16149612 C-A Homo INTERGENIC
SBS Chr2 25912977 A-C Hetero INTERGENIC
SBS Chr2 34456076 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g358500
SBS Chr3 18445095 C-T Homo INTRON
SBS Chr3 24563967 A-G Hetero INTRON
SBS Chr4 1110486 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g008700
SBS Chr4 5593194 G-A Hetero INTERGENIC
SBS Chr4 6232693 C-T Hetero INTRON
SBS Chr4 20580217 A-G Hetero INTERGENIC
SBS Chr4 23587248 C-T Hetero INTERGENIC
SBS Chr5 5220298 G-T Homo INTERGENIC
SBS Chr5 14792365 T-C Hetero INTERGENIC
SBS Chr6 567182 C-T Homo INTERGENIC
SBS Chr6 5288239 T-C Homo INTERGENIC
SBS Chr6 14542692 C-T Hetero INTERGENIC
SBS Chr6 16763118 T-C Hetero INTERGENIC
SBS Chr6 26721307 T-A Hetero INTRON
SBS Chr6 26721308 G-A Hetero INTRON
SBS Chr6 26721310 T-A Hetero INTRON
SBS Chr7 17893099 C-A Hetero INTERGENIC
SBS Chr7 18900077 T-A Hetero INTERGENIC
SBS Chr8 13463101 C-G Hetero INTERGENIC
SBS Chr8 20394466 C-T Hetero INTERGENIC
SBS Chr8 23428314 G-A Hetero INTERGENIC
SBS Chr9 1323717 C-T Hetero INTERGENIC
SBS Chr9 3105355 G-A Hetero INTERGENIC
SBS Chr10 5935425 T-A Hetero INTRON
SBS Chr10 14584811 C-T Hetero INTERGENIC
SBS Chr10 22364475 A-G Hetero INTERGENIC
SBS Chr11 5707616 G-T Hetero SYNONYMOUS_CODING
SBS Chr11 5841193 C-T Hetero INTERGENIC
SBS Chr11 10925522 A-G Hetero INTERGENIC
SBS Chr11 12566729 C-T Hetero INTERGENIC
SBS Chr11 12568672 G-T Hetero INTERGENIC
SBS Chr11 14993577 C-T Hetero INTERGENIC
SBS Chr11 20083768 C-T Hetero INTERGENIC
SBS Chr12 1567153 G-T Hetero INTERGENIC
SBS Chr12 4598293 T-C Hetero INTERGENIC
SBS Chr12 23448799 T-A Homo INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 8353839 8353841 2
Deletion Chr2 8641744 8641746 2
Deletion Chr2 13844476 13844477 1
Deletion Chr11 24571298 24571307 9
Deletion Chr12 26723647 26723648 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 176980 176987 6
Insertion Chr5 8019107 8019111 3
Insertion Chr6 4257295 4257298 2
Insertion Chr12 15329994 15329997 2
Insertion Chr4 11570664 11570667 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 11283150 Chr2 13106984
Translocation Chr7 11291480 Chr2 13106966
Translocation Chr5 20665686 Chr2 35506895
Translocation Chr5 20666604 Chr2 35506890

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1552254	A-G	Hetero	INTERGENIC
SBS	Chr1	3994610	T-A	Hetero	INTERGENIC
SBS	Chr1	11797652	C-T	Hetero	INTERGENIC
SBS	Chr1	24624445	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g237900
SBS	Chr1	24974254	A-T	Hetero	INTERGENIC
SBS	Chr1	30568081	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g302500
SBS	Chr1	31727286	T-G	Hetero	INTERGENIC
SBS	Chr1	38961428	C-T	Hetero	INTERGENIC
SBS	Chr2	10819472	C-A	Homo	INTERGENIC
SBS	Chr2	13142074	T-C	Homo	INTERGENIC
SBS	Chr2	13489981	T-C	Hetero	INTERGENIC
SBS	Chr2	16149612	C-A	Homo	INTERGENIC
SBS	Chr2	25912977	A-C	Hetero	INTERGENIC
SBS	Chr2	34456076	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g358500
SBS	Chr3	18445095	C-T	Homo	INTRON
SBS	Chr3	24563967	A-G	Hetero	INTRON
SBS	Chr4	1110486	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g008700
SBS	Chr4	5593194	G-A	Hetero	INTERGENIC
SBS	Chr4	6232693	C-T	Hetero	INTRON
SBS	Chr4	20580217	A-G	Hetero	INTERGENIC
SBS	Chr4	23587248	C-T	Hetero	INTERGENIC
SBS	Chr5	5220298	G-T	Homo	INTERGENIC
SBS	Chr5	14792365	T-C	Hetero	INTERGENIC
SBS	Chr6	567182	C-T	Homo	INTERGENIC
SBS	Chr6	5288239	T-C	Homo	INTERGENIC
SBS	Chr6	14542692	C-T	Hetero	INTERGENIC
SBS	Chr6	16763118	T-C	Hetero	INTERGENIC
SBS	Chr6	26721307	T-A	Hetero	INTRON
SBS	Chr6	26721308	G-A	Hetero	INTRON
SBS	Chr6	26721310	T-A	Hetero	INTRON
SBS	Chr7	17893099	C-A	Hetero	INTERGENIC
SBS	Chr7	18900077	T-A	Hetero	INTERGENIC
SBS	Chr8	13463101	C-G	Hetero	INTERGENIC
SBS	Chr8	20394466	C-T	Hetero	INTERGENIC
SBS	Chr8	23428314	G-A	Hetero	INTERGENIC
SBS	Chr9	1323717	C-T	Hetero	INTERGENIC
SBS	Chr9	3105355	G-A	Hetero	INTERGENIC
SBS	Chr10	5935425	T-A	Hetero	INTRON
SBS	Chr10	14584811	C-T	Hetero	INTERGENIC
SBS	Chr10	22364475	A-G	Hetero	INTERGENIC
SBS	Chr11	5707616	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	5841193	C-T	Hetero	INTERGENIC
SBS	Chr11	10925522	A-G	Hetero	INTERGENIC
SBS	Chr11	12566729	C-T	Hetero	INTERGENIC
SBS	Chr11	12568672	G-T	Hetero	INTERGENIC
SBS	Chr11	14993577	C-T	Hetero	INTERGENIC
SBS	Chr11	20083768	C-T	Hetero	INTERGENIC
SBS	Chr12	1567153	G-T	Hetero	INTERGENIC
SBS	Chr12	4598293	T-C	Hetero	INTERGENIC
SBS	Chr12	23448799	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	8353839	8353841	2
Deletion	Chr2	8641744	8641746	2
Deletion	Chr2	13844476	13844477	1
Deletion	Chr11	24571298	24571307	9
Deletion	Chr12	26723647	26723648	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11283150	Chr2	13106984
Translocation	Chr7	11291480	Chr2	13106966
Translocation	Chr5	20665686	Chr2	35506895
Translocation	Chr5	20666604	Chr2	35506890

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes