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| Mutant Information |
|---|
| Mutant Name | FN2234-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2234-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9317443 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 31668620 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 36258033 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 11511808 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25044397 | T-G | Hetero | INTRON | |
| SBS | Chr3 | 25381989 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 32101560 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32101561 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35990192 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 30613086 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 3499065 | C-G | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 5004833 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6709953 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g067600 |
| SBS | Chr5 | 11518344 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 24128198 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 24128210 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 10960810 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23914433 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 23914434 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 1390551 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 565089 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 5332808 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10686720 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 23613762 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13958640 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 18988364 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26195792 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g211500 |
| SBS | Chr12 | 14003040 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16578500 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 17355547 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18021636 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g132600 |
| SBS | Chr12 | 20659919 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 24689116 | G-A | Hetero | INTRON |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 60543 | 60544 | 1 | |
| Deletion | Chr3 | 5725440 | 5725441 | 1 | |
| Deletion | Chr7 | 6344001 | 6358000 | 13999 | |
| Deletion | Chr9 | 7418001 | 7614000 | 195999 | 7 |
| Deletion | Chr12 | 7429906 | 7429991 | 85 | |
| Deletion | Chr1 | 10004683 | 10004686 | 3 | |
| Deletion | Chr9 | 13482572 | 13482574 | 2 | |
| Deletion | Chr11 | 13854218 | 13854231 | 13 | |
| Deletion | Chr8 | 21512716 | 21512718 | 2 | |
| Deletion | Chr11 | 24769842 | 24769844 | 2 | |
| Deletion | Chr2 | 30568722 | 30568733 | 11 | OsKitaake02g312200 |
| Deletion | Chr2 | 32100193 | 32100195 | 2 | |
| Deletion | Chr4 | 32136741 | 32136749 | 8 | |
| Deletion | Chr4 | 34428124 | 34428133 | 9 | |
| Deletion | Chr3 | 36538644 | 36538645 | 1 | OsKitaake03g406200 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 12280345 | 12280348 | 2 | |
| Insertion | Chr4 | 14260248 | 14260251 | 2 | |
| Insertion | Chr12 | 22162313 | 22162316 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 19018410 | 19225277 | 2 |
| Inversion | Chr11 | 19018479 | 19225279 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 6345080 | Chr1 | 32419720 | OsKitaake01g327900 |
| Translocation | Chr7 | 6345439 | Chr1 | 32419724 | OsKitaake01g327900 |
| Translocation | Chr11 | 25162053 | Chr2 | 7425942 |