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Mutant Information

Mutant Name	FN2235-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2235-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1401690 C-T Hetero INTERGENIC
SBS Chr1 19353074 G-A Hetero INTERGENIC
SBS Chr1 19715457 C-T Hetero INTERGENIC
SBS Chr1 22054134 T-C Hetero INTERGENIC
SBS Chr1 25479153 A-G Hetero INTERGENIC
SBS Chr1 32614017 C-G Hetero INTERGENIC
SBS Chr1 35147740 C-T Hetero INTERGENIC
SBS Chr1 36541296 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 36541297 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 37052550 A-G Hetero UTR_3_PRIME
SBS Chr2 2569703 T-C Homo INTERGENIC
SBS Chr2 18039000 C-A Hetero INTERGENIC
SBS Chr2 32955266 T-A Homo INTERGENIC
SBS Chr3 4122612 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g058500
SBS Chr3 18099771 C-T Hetero INTERGENIC
SBS Chr3 24689435 C-T Homo INTERGENIC
SBS Chr3 32547861 A-T Hetero INTERGENIC
SBS Chr4 3381430 A-T Hetero INTERGENIC
SBS Chr4 8397710 G-A Hetero INTERGENIC
SBS Chr4 9964029 C-A Hetero INTERGENIC
SBS Chr4 12202342 C-T Hetero INTERGENIC
SBS Chr4 12202364 C-G Hetero INTERGENIC
SBS Chr4 21662663 A-G Hetero INTERGENIC
SBS Chr4 25827580 A-G Hetero INTERGENIC
SBS Chr4 26151018 G-T Hetero INTERGENIC
SBS Chr5 4728938 C-T Hetero INTERGENIC
SBS Chr5 9646781 A-T Hetero INTERGENIC
SBS Chr6 11075098 T-C Hetero INTERGENIC
SBS Chr7 10636180 G-A Hetero INTERGENIC
SBS Chr7 13531197 T-A Hetero INTRON
SBS Chr7 18685584 T-C Hetero INTRON
SBS Chr7 22915719 T-G Homo INTRON
SBS Chr8 967781 G-A Hetero INTERGENIC
SBS Chr8 8941306 T-C Hetero INTERGENIC
SBS Chr8 11188985 G-A Hetero INTERGENIC
SBS Chr9 4825765 A-G Hetero INTERGENIC
SBS Chr9 4857001 T-A Hetero INTERGENIC
SBS Chr9 6114739 A-T Hetero INTERGENIC
SBS Chr10 21945704 T-C Hetero INTRON
SBS Chr11 11600880 T-C Homo INTERGENIC
SBS Chr11 15613633 G-A Hetero INTERGENIC
SBS Chr11 18243098 G-A Hetero INTERGENIC
SBS Chr12 13944434 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 756168 756171 3
Deletion Chr10 8096190 8096273 83
Deletion Chr5 9223961 9223966 5
Deletion Chr2 9795529 9795531 2
Deletion Chr11 16575001 16729000 153999 7
Deletion Chr4 20202830 20202832 2
Deletion Chr7 24325917 24325919 2
Deletion Chr7 25447680 25447707 27
Deletion Chr7 25839097 25839102 5
Deletion Chr8 26206640 26206641 1 OsKitaake08g209000
Deletion Chr3 27612852 27612853 1 OsKitaake03g285400

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 37213572 37213574 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 12731252 12766087
Inversion Chr1 23635554 23725861 2
Inversion Chr1 23635556 23725860 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 20881932 Chr2 21423693 2
Translocation Chr10 21368198 Chr2 21423538 OsKitaake02g206900
Translocation Chr8 24766231 Chr5 24248073 OsKitaake05g216200
Translocation Chr8 24766234 Chr5 24237830 OsKitaake05g216000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1401690	C-T	Hetero	INTERGENIC
SBS	Chr1	19353074	G-A	Hetero	INTERGENIC
SBS	Chr1	19715457	C-T	Hetero	INTERGENIC
SBS	Chr1	22054134	T-C	Hetero	INTERGENIC
SBS	Chr1	25479153	A-G	Hetero	INTERGENIC
SBS	Chr1	32614017	C-G	Hetero	INTERGENIC
SBS	Chr1	35147740	C-T	Hetero	INTERGENIC
SBS	Chr1	36541296	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	36541297	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	37052550	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	2569703	T-C	Homo	INTERGENIC
SBS	Chr2	18039000	C-A	Hetero	INTERGENIC
SBS	Chr2	32955266	T-A	Homo	INTERGENIC
SBS	Chr3	4122612	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g058500
SBS	Chr3	18099771	C-T	Hetero	INTERGENIC
SBS	Chr3	24689435	C-T	Homo	INTERGENIC
SBS	Chr3	32547861	A-T	Hetero	INTERGENIC
SBS	Chr4	3381430	A-T	Hetero	INTERGENIC
SBS	Chr4	8397710	G-A	Hetero	INTERGENIC
SBS	Chr4	9964029	C-A	Hetero	INTERGENIC
SBS	Chr4	12202342	C-T	Hetero	INTERGENIC
SBS	Chr4	12202364	C-G	Hetero	INTERGENIC
SBS	Chr4	21662663	A-G	Hetero	INTERGENIC
SBS	Chr4	25827580	A-G	Hetero	INTERGENIC
SBS	Chr4	26151018	G-T	Hetero	INTERGENIC
SBS	Chr5	4728938	C-T	Hetero	INTERGENIC
SBS	Chr5	9646781	A-T	Hetero	INTERGENIC
SBS	Chr6	11075098	T-C	Hetero	INTERGENIC
SBS	Chr7	10636180	G-A	Hetero	INTERGENIC
SBS	Chr7	13531197	T-A	Hetero	INTRON
SBS	Chr7	18685584	T-C	Hetero	INTRON
SBS	Chr7	22915719	T-G	Homo	INTRON
SBS	Chr8	967781	G-A	Hetero	INTERGENIC
SBS	Chr8	8941306	T-C	Hetero	INTERGENIC
SBS	Chr8	11188985	G-A	Hetero	INTERGENIC
SBS	Chr9	4825765	A-G	Hetero	INTERGENIC
SBS	Chr9	4857001	T-A	Hetero	INTERGENIC
SBS	Chr9	6114739	A-T	Hetero	INTERGENIC
SBS	Chr10	21945704	T-C	Hetero	INTRON
SBS	Chr11	11600880	T-C	Homo	INTERGENIC
SBS	Chr11	15613633	G-A	Hetero	INTERGENIC
SBS	Chr11	18243098	G-A	Hetero	INTERGENIC
SBS	Chr12	13944434	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	756168	756171	3
Deletion	Chr10	8096190	8096273	83
Deletion	Chr5	9223961	9223966	5
Deletion	Chr2	9795529	9795531	2
Deletion	Chr11	16575001	16729000	153999	7
Deletion	Chr4	20202830	20202832	2
Deletion	Chr7	24325917	24325919	2
Deletion	Chr7	25447680	25447707	27
Deletion	Chr7	25839097	25839102	5
Deletion	Chr8	26206640	26206641	1	OsKitaake08g209000
Deletion	Chr3	27612852	27612853	1	OsKitaake03g285400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12731252	12766087
Inversion	Chr1	23635554	23725861	2
Inversion	Chr1	23635556	23725860	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes