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Mutant Information

Mutant Name	FN2237-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2237-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13158910 C-A Hetero INTERGENIC
SBS Chr1 21735282 A-T Homo INTRON
SBS Chr2 15679252 C-T Homo INTERGENIC
SBS Chr2 33155664 G-A Homo UTR_5_PRIME
SBS Chr3 14329887 G-A Homo INTERGENIC
SBS Chr3 17402835 C-T Hetero INTRON
SBS Chr3 28490744 A-G Homo INTRON
SBS Chr4 12764198 G-T Hetero INTRON
SBS Chr4 26072991 C-T Hetero INTERGENIC
SBS Chr5 3942727 G-T Hetero UTR_3_PRIME
SBS Chr5 5303289 G-A Homo INTERGENIC
SBS Chr5 28840012 A-T Homo NON_SYNONYMOUS_CODING OsKitaake05g271300
SBS Chr6 13529809 T-C Hetero INTERGENIC
SBS Chr6 19639788 G-A Hetero INTERGENIC
SBS Chr6 21978995 G-T Hetero INTERGENIC
SBS Chr7 4325257 A-T Hetero INTERGENIC
SBS Chr7 23612091 C-T Hetero UTR_3_PRIME
SBS Chr8 7329146 G-T Hetero INTERGENIC
SBS Chr8 8062507 T-G Hetero INTERGENIC
SBS Chr8 8328145 C-A Hetero UTR_5_PRIME
SBS Chr9 350840 G-A Hetero INTERGENIC
SBS Chr9 8850342 G-C Hetero INTERGENIC
SBS Chr9 17898129 A-G Hetero INTERGENIC
SBS Chr10 21811729 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g175500
SBS Chr11 1396768 T-C Homo INTERGENIC
SBS Chr11 10152539 T-A Hetero INTERGENIC
SBS Chr11 13311416 C-G Hetero INTERGENIC
SBS Chr11 25285586 C-T Hetero INTERGENIC
SBS Chr11 29025844 A-G Hetero INTERGENIC
SBS Chr12 4104211 C-T Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 910001 920000 9999 3
Deletion Chr11 1004001 1019000 14999 3
Deletion Chr11 2146004 2146018 14
Deletion Chr11 2246402 2246404 2
Deletion Chr7 5663984 5663986 2
Deletion Chr9 6272001 6282000 9999 3
Deletion Chr3 10724785 10724788 3
Deletion Chr8 11428001 11474000 45999 2
Deletion Chr7 11922796 11922807 11
Deletion Chr2 13837961 13837963 2
Deletion Chr1 14676001 14692000 15999 OsKitaake01g166200
Deletion Chr8 21621116 21621118 2
Deletion Chr1 23944171 23944172 1
Deletion Chr1 26681087 26681089 2
Deletion Chr12 26724001 26735000 10999 OsKitaake12g222100
Deletion Chr4 29187001 29197000 9999
Deletion Chr4 30759001 30775000 15999 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5588785 5588788 2
Insertion Chr12 24610157 24610160 2
Insertion Chr3 4089967 4089969 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 26217737 26287672 OsKitaake07g241900
Inversion Chr7 26217739 26287672 OsKitaake07g241900

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1002009 Chr4 29198566
Translocation Chr11 1020407 Chr4 29186642 OsKitaake11g012700
Translocation Chr5 3828377 Chr1 17333396 OsKitaake01g178800
Translocation Chr10 13132503 Chr2 31515886
Translocation Chr11 13398587 Chr9 7219079
Translocation Chr12 23433568 Chr7 11460080

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13158910	C-A	Hetero	INTERGENIC
SBS	Chr1	21735282	A-T	Homo	INTRON
SBS	Chr2	15679252	C-T	Homo	INTERGENIC
SBS	Chr2	33155664	G-A	Homo	UTR_5_PRIME
SBS	Chr3	14329887	G-A	Homo	INTERGENIC
SBS	Chr3	17402835	C-T	Hetero	INTRON
SBS	Chr3	28490744	A-G	Homo	INTRON
SBS	Chr4	12764198	G-T	Hetero	INTRON
SBS	Chr4	26072991	C-T	Hetero	INTERGENIC
SBS	Chr5	3942727	G-T	Hetero	UTR_3_PRIME
SBS	Chr5	5303289	G-A	Homo	INTERGENIC
SBS	Chr5	28840012	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g271300
SBS	Chr6	13529809	T-C	Hetero	INTERGENIC
SBS	Chr6	19639788	G-A	Hetero	INTERGENIC
SBS	Chr6	21978995	G-T	Hetero	INTERGENIC
SBS	Chr7	4325257	A-T	Hetero	INTERGENIC
SBS	Chr7	23612091	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	7329146	G-T	Hetero	INTERGENIC
SBS	Chr8	8062507	T-G	Hetero	INTERGENIC
SBS	Chr8	8328145	C-A	Hetero	UTR_5_PRIME
SBS	Chr9	350840	G-A	Hetero	INTERGENIC
SBS	Chr9	8850342	G-C	Hetero	INTERGENIC
SBS	Chr9	17898129	A-G	Hetero	INTERGENIC
SBS	Chr10	21811729	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g175500
SBS	Chr11	1396768	T-C	Homo	INTERGENIC
SBS	Chr11	10152539	T-A	Hetero	INTERGENIC
SBS	Chr11	13311416	C-G	Hetero	INTERGENIC
SBS	Chr11	25285586	C-T	Hetero	INTERGENIC
SBS	Chr11	29025844	A-G	Hetero	INTERGENIC
SBS	Chr12	4104211	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	910001	920000	9999	3
Deletion	Chr11	1004001	1019000	14999	3
Deletion	Chr11	2146004	2146018	14
Deletion	Chr11	2246402	2246404	2
Deletion	Chr7	5663984	5663986	2
Deletion	Chr9	6272001	6282000	9999	3
Deletion	Chr3	10724785	10724788	3
Deletion	Chr8	11428001	11474000	45999	2
Deletion	Chr7	11922796	11922807	11
Deletion	Chr2	13837961	13837963	2
Deletion	Chr1	14676001	14692000	15999	OsKitaake01g166200
Deletion	Chr8	21621116	21621118	2
Deletion	Chr1	23944171	23944172	1
Deletion	Chr1	26681087	26681089	2
Deletion	Chr12	26724001	26735000	10999	OsKitaake12g222100
Deletion	Chr4	29187001	29197000	9999
Deletion	Chr4	30759001	30775000	15999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	26217737	26287672	OsKitaake07g241900
Inversion	Chr7	26217739	26287672	OsKitaake07g241900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes