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| Mutant Information |
|---|
| Mutant Name | FN2239-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2239-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15890731 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 15890732 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 15890733 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28796553 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 11109847 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 14910527 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14971584 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 23891382 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 9954646 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18208218 | T-G | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 22867968 | T-G | Homo | INTERGENIC | |
| SBS | Chr5 | 1945423 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 19739288 | T-G | Hetero | INTRON | |
| SBS | Chr5 | 19742415 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 21262866 | T-A | Homo | INTRON | |
| SBS | Chr5 | 24945336 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20240896 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 11125089 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12708529 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17273612 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 20493112 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 21301215 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7287041 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 10135916 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 21841286 | T-A | Hetero | STOP_GAINED | OsKitaake09g193100 |
| SBS | Chr10 | 3136572 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 6294627 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 10338425 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 12676948 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 14855963 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14855964 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2412199 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 5599902 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 17392770 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26569516 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g216000 |
| SBS | Chr11 | 29673709 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15012738 | T-C | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1142266 | 1142269 | 3 | |
| Deletion | Chr11 | 10903001 | 10925000 | 21999 | OsKitaake11g105900 |
| Deletion | Chr3 | 11872182 | 11872193 | 11 | |
| Deletion | Chr2 | 15935737 | 15935738 | 1 | |
| Deletion | Chr8 | 23553027 | 23553046 | 19 | |
| Deletion | Chr3 | 35411244 | 35411249 | 5 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 11682007 | 11682010 | 2 | |
| Insertion | Chr3 | 27153149 | 27153151 | 1 | OsKitaake03g279700  |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 1537339 | 1651730 | 2 |
| Inversion | Chr6 | 1537345 | 1652363 | 2 |
| Inversion | Chr11 | 9913765 | 10903032 | OsKitaake11g105900 |