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| Mutant Information |
|---|
| Mutant Name | FN224-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN224-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13887598 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 27509624 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 11221290 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19605203 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5371143 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 4899959 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 18091805 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 18091806 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35804729 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 4401507 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 15890555 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 28340644 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 9754194 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13465794 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 29365390 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 12061104 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 6128218 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g035200 |
| SBS | Chr10 | 5841445 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8590068 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10835227 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 14711350 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17371895 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21853597 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23290018 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22412676 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 11292942 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 23809916 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 24302636 | G-A | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1556806 | 1556808 | 2 | |
| Deletion | Chr11 | 7091160 | 7091164 | 4 | |
| Deletion | Chr9 | 9425001 | 9985000 | 559999 | 34 |
| Deletion | Chr9 | 10828001 | 10839000 | 10999 | OsKitaake09g067200 |
| Deletion | Chr12 | 11719649 | 11719804 | 155 | |
| Deletion | Chr1 | 13883008 | 13883014 | 6 | |
| Deletion | Chr5 | 14257666 | 14257668 | 2 | |
| Deletion | Chr2 | 20550466 | 20550788 | 322 | |
| Deletion | Chr2 | 23022802 | 23022808 | 6 | |
| Deletion | Chr4 | 25993582 | 25993593 | 11 | |
| Deletion | Chr3 | 26332001 | 26406000 | 73999 | 3 |
| Deletion | Chr12 | 26679671 | 26679673 | 2 | |
| Deletion | Chr11 | 27004305 | 27004309 | 4 | |
| Deletion | Chr7 | 28802017 | 28802020 | 3 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 29431343 | 29431350 | 6 | |
| Insertion | Chr3 | 34323408 | 34323411 | 2 | |
| Insertion | Chr6 | 13677389 | 13677392 | 2 | |
| Insertion | Chr8 | 11741192 | 11741195 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 16148807 | 16400162 | OsKitaake10g107900 |
| Inversion | Chr11 | 16772740 | 16818701 | |
| Inversion | Chr11 | 16772745 | 16818708 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 23567096 | Chr1 | 27245451 | OsKitaake01g264800 |