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| Mutant Information |
|---|
| Mutant Name | FN2240-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2240-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6751509 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 14908411 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16800285 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27958695 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 36030008 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 14693725 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 24363305 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 15807026 | G-A | Homo | INTRON | |
| SBS | Chr4 | 24112097 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 12145874 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12180835 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12868744 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25075121 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 27076599 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 27076600 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 5596544 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 5596545 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 6572551 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 24172204 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7503923 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10808519 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 19504968 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 241869 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 17207006 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20951383 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 2417281 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2417284 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 4507068 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12691502 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13179125 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18531106 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21704474 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21776433 | C-A | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 3467411 | 3467415 | 4 | OsKitaake06g048500 |
| Deletion | Chr12 | 4001441 | 4001443 | 2 | |
| Deletion | Chr9 | 4586611 | 4586735 | 124 | |
| Deletion | Chr2 | 4849850 | 4849858 | 8 | |
| Deletion | Chr6 | 7157001 | 7207000 | 49999 | 10 |
| Deletion | Chr6 | 7277666 | 7277678 | 12 | OsKitaake06g093900 |
| Deletion | Chr12 | 7563001 | 7578000 | 14999 | |
| Deletion | Chr8 | 7963001 | 8089000 | 125999 | 10 |
| Deletion | Chr8 | 8095001 | 8206000 | 110999 | 15 |
| Deletion | Chr10 | 9783325 | 9783326 | 1 | |
| Deletion | Chr1 | 10071995 | 10072000 | 5 | |
| Deletion | Chr11 | 17445288 | 17445290 | 2 | |
| Deletion | Chr4 | 19866222 | 19866231 | 9 | OsKitaake04g103700 |
| Deletion | Chr2 | 32222150 | 32222153 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 13410702 | 13410705 | 2 | |
| Insertion | Chr6 | 27828600 | 27828603 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 7575285 | 8233634 | |
| Inversion | Chr12 | 8196181 | 8233635 |