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Mutant Information

Mutant Name	FN2241-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2241-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7750216 G-A Homo INTERGENIC
SBS Chr1 16678571 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g177400
SBS Chr2 2161716 C-A Hetero INTRON
SBS Chr2 2161717 G-A Hetero INTRON
SBS Chr3 2569803 C-T Hetero INTERGENIC
SBS Chr3 8712193 T-A Hetero INTRON
SBS Chr3 8712194 G-A Hetero INTRON
SBS Chr3 35184068 G-A Hetero INTERGENIC
SBS Chr4 22315004 A-G Hetero INTERGENIC
SBS Chr4 24090815 G-A Hetero INTRON
SBS Chr4 33471112 A-G Hetero INTERGENIC
SBS Chr5 3053082 A-G Hetero INTRON
SBS Chr5 14754999 C-T Homo INTERGENIC
SBS Chr5 14755007 G-T Homo INTERGENIC
SBS Chr5 21259357 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 25140689 T-A Hetero INTERGENIC
SBS Chr5 25140692 T-A Hetero INTERGENIC
SBS Chr5 25140694 G-A Hetero INTERGENIC
SBS Chr5 25208504 T-A Hetero INTRON
SBS Chr5 25208505 T-A Hetero INTRON
SBS Chr5 25208507 T-A Hetero INTRON
SBS Chr6 28540354 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g261800
SBS Chr7 7696732 G-T Hetero INTERGENIC
SBS Chr7 9034515 G-A Hetero INTERGENIC
SBS Chr7 22829276 G-A Homo INTERGENIC
SBS Chr8 12953373 C-G Homo INTERGENIC
SBS Chr8 19158652 T-A Hetero INTERGENIC
SBS Chr8 27175440 T-G Hetero SYNONYMOUS_CODING
SBS Chr9 5544082 C-A Hetero INTERGENIC
SBS Chr9 13693065 T-A Hetero UTR_3_PRIME
SBS Chr9 14215161 T-A Hetero INTERGENIC
SBS Chr9 21477791 A-G Homo SYNONYMOUS_CODING
SBS Chr10 3444422 C-T Homo INTERGENIC
SBS Chr10 5561111 G-A Hetero INTRON
SBS Chr10 20748682 T-A Hetero INTERGENIC
SBS Chr11 3462078 C-T Hetero INTERGENIC
SBS Chr11 7873783 C-T Hetero INTRON
SBS Chr11 17573971 C-T Hetero INTRON
SBS Chr12 13620491 C-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 814620 814637 17
Deletion Chr11 1940349 1940351 2
Deletion Chr6 6776038 6776048 10
Deletion Chr7 20868757 20868761 4
Deletion Chr6 21783614 21783616 2
Deletion Chr12 23565179 23565181 2
Deletion Chr7 24405518 24405519 1
Deletion Chr7 27525077 27525088 11
Deletion Chr6 30880268 30880273 5 OsKitaake06g292200

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36946040 36946043 2
Insertion Chr4 9419907 9419909 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 18029601 18483559 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 19449324 Chr5 24943964 OsKitaake12g145700
Translocation Chr12 19449879 Chr5 24943962 OsKitaake12g145700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7750216	G-A	Homo	INTERGENIC
SBS	Chr1	16678571	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g177400
SBS	Chr2	2161716	C-A	Hetero	INTRON
SBS	Chr2	2161717	G-A	Hetero	INTRON
SBS	Chr3	2569803	C-T	Hetero	INTERGENIC
SBS	Chr3	8712193	T-A	Hetero	INTRON
SBS	Chr3	8712194	G-A	Hetero	INTRON
SBS	Chr3	35184068	G-A	Hetero	INTERGENIC
SBS	Chr4	22315004	A-G	Hetero	INTERGENIC
SBS	Chr4	24090815	G-A	Hetero	INTRON
SBS	Chr4	33471112	A-G	Hetero	INTERGENIC
SBS	Chr5	3053082	A-G	Hetero	INTRON
SBS	Chr5	14754999	C-T	Homo	INTERGENIC
SBS	Chr5	14755007	G-T	Homo	INTERGENIC
SBS	Chr5	21259357	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	25140689	T-A	Hetero	INTERGENIC
SBS	Chr5	25140692	T-A	Hetero	INTERGENIC
SBS	Chr5	25140694	G-A	Hetero	INTERGENIC
SBS	Chr5	25208504	T-A	Hetero	INTRON
SBS	Chr5	25208505	T-A	Hetero	INTRON
SBS	Chr5	25208507	T-A	Hetero	INTRON
SBS	Chr6	28540354	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g261800
SBS	Chr7	7696732	G-T	Hetero	INTERGENIC
SBS	Chr7	9034515	G-A	Hetero	INTERGENIC
SBS	Chr7	22829276	G-A	Homo	INTERGENIC
SBS	Chr8	12953373	C-G	Homo	INTERGENIC
SBS	Chr8	19158652	T-A	Hetero	INTERGENIC
SBS	Chr8	27175440	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr9	5544082	C-A	Hetero	INTERGENIC
SBS	Chr9	13693065	T-A	Hetero	UTR_3_PRIME
SBS	Chr9	14215161	T-A	Hetero	INTERGENIC
SBS	Chr9	21477791	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr10	3444422	C-T	Homo	INTERGENIC
SBS	Chr10	5561111	G-A	Hetero	INTRON
SBS	Chr10	20748682	T-A	Hetero	INTERGENIC
SBS	Chr11	3462078	C-T	Hetero	INTERGENIC
SBS	Chr11	7873783	C-T	Hetero	INTRON
SBS	Chr11	17573971	C-T	Hetero	INTRON
SBS	Chr12	13620491	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	814620	814637	17
Deletion	Chr11	1940349	1940351	2
Deletion	Chr6	6776038	6776048	10
Deletion	Chr7	20868757	20868761	4
Deletion	Chr6	21783614	21783616	2
Deletion	Chr12	23565179	23565181	2
Deletion	Chr7	24405518	24405519	1
Deletion	Chr7	27525077	27525088	11
Deletion	Chr6	30880268	30880273	5	OsKitaake06g292200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	18029601	18483559	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes