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Mutant Information

Mutant Name	FN2242-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2242-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 61

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1894599 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g022800
SBS Chr1 11504707 C-G Hetero INTERGENIC
SBS Chr1 12487841 A-G Hetero INTRON
SBS Chr1 13913497 C-G Hetero INTERGENIC
SBS Chr1 27757424 G-A Hetero INTERGENIC
SBS Chr1 41092483 A-G Hetero INTERGENIC
SBS Chr2 9310078 C-T Hetero INTERGENIC
SBS Chr2 10484169 T-A Hetero INTERGENIC
SBS Chr2 11413729 A-G Hetero INTERGENIC
SBS Chr3 4502483 T-C Hetero INTERGENIC
SBS Chr3 14317687 T-C Homo INTERGENIC
SBS Chr3 23982050 G-C Hetero INTERGENIC
SBS Chr4 13223504 A-T Hetero UTR_3_PRIME
SBS Chr4 17703148 C-T Hetero INTERGENIC
SBS Chr4 24062761 C-G Hetero INTRON
SBS Chr4 28842113 C-T Hetero INTRON
SBS Chr4 31505194 T-A Hetero INTERGENIC
SBS Chr5 1157774 T-A Hetero INTERGENIC
SBS Chr5 18724479 C-T Hetero INTERGENIC
SBS Chr5 28715748 C-T Hetero INTERGENIC
SBS Chr6 22406968 G-A Hetero INTERGENIC
SBS Chr6 30736394 A-T Hetero INTERGENIC
SBS Chr7 278478 C-T Hetero INTERGENIC
SBS Chr7 3122990 G-T Hetero INTERGENIC
SBS Chr7 5343875 C-T Hetero INTERGENIC
SBS Chr7 10840609 C-T Hetero INTERGENIC
SBS Chr7 11272981 A-G Hetero INTERGENIC
SBS Chr8 4493581 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g050800
SBS Chr8 8034559 G-T Homo INTERGENIC
SBS Chr8 11292893 G-A Hetero INTERGENIC
SBS Chr8 13251498 C-T Hetero INTERGENIC
SBS Chr8 15601265 G-T Hetero INTERGENIC
SBS Chr8 16764941 C-G Hetero INTERGENIC
SBS Chr9 898712 A-G Hetero INTERGENIC
SBS Chr9 4088416 G-A Hetero INTERGENIC
SBS Chr9 4689784 C-A Hetero INTERGENIC
SBS Chr9 14987075 G-A Hetero INTERGENIC
SBS Chr9 17246586 G-A Hetero INTERGENIC
SBS Chr10 7405094 G-A Hetero INTERGENIC
SBS Chr10 8807455 C-A Homo INTERGENIC
SBS Chr10 13458016 A-G Homo INTERGENIC
SBS Chr10 14181393 G-T Hetero INTRON
SBS Chr11 4525566 G-T Hetero INTERGENIC
SBS Chr11 8162100 C-A Hetero INTERGENIC
SBS Chr11 8621990 G-A Hetero INTERGENIC
SBS Chr11 9597521 C-T Homo INTERGENIC
SBS Chr11 11767680 A-T Hetero INTERGENIC
SBS Chr11 12226393 C-T Hetero INTERGENIC
SBS Chr11 13508326 G-A Hetero INTERGENIC
SBS Chr11 17203204 G-T Hetero INTRON
SBS Chr11 18348600 A-T Hetero INTERGENIC
SBS Chr11 27775105 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g226700
SBS Chr12 1956900 C-T Hetero INTERGENIC
SBS Chr12 7845309 G-C Hetero INTERGENIC
SBS Chr12 9686066 G-A Homo INTERGENIC
SBS Chr12 11923406 G-T Homo NON_SYNONYMOUS_CODING OsKitaake12g104200
SBS Chr12 12033566 T-A Homo INTERGENIC
SBS Chr12 14185634 G-A Hetero INTERGENIC
SBS Chr12 21229123 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g166900
SBS Chr12 24016208 T-C Homo INTERGENIC
SBS Chr12 25516450 C-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 11490947 11490950 3
Deletion Chr12 12056945 12056950 5
Deletion Chr2 22329001 22339000 9999 OsKitaake02g216000
Deletion Chr10 23616427 23616430 3
Deletion Chr12 25459189 25459206 17
Deletion Chr2 32743459 32743460 1
Deletion Chr2 32743675 32743676 1 OsKitaake02g335500
Deletion Chr2 33862967 33862968 1
Deletion Chr3 34014083 34014085 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10343054 10343058 3
Insertion Chr2 18772562 18772565 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 22229119 22328720 OsKitaake02g216000
Inversion Chr2 22229138 22339802

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 14600571 Chr3 35748326 OsKitaake03g392900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1894599	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g022800
SBS	Chr1	11504707	C-G	Hetero	INTERGENIC
SBS	Chr1	12487841	A-G	Hetero	INTRON
SBS	Chr1	13913497	C-G	Hetero	INTERGENIC
SBS	Chr1	27757424	G-A	Hetero	INTERGENIC
SBS	Chr1	41092483	A-G	Hetero	INTERGENIC
SBS	Chr2	9310078	C-T	Hetero	INTERGENIC
SBS	Chr2	10484169	T-A	Hetero	INTERGENIC
SBS	Chr2	11413729	A-G	Hetero	INTERGENIC
SBS	Chr3	4502483	T-C	Hetero	INTERGENIC
SBS	Chr3	14317687	T-C	Homo	INTERGENIC
SBS	Chr3	23982050	G-C	Hetero	INTERGENIC
SBS	Chr4	13223504	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	17703148	C-T	Hetero	INTERGENIC
SBS	Chr4	24062761	C-G	Hetero	INTRON
SBS	Chr4	28842113	C-T	Hetero	INTRON
SBS	Chr4	31505194	T-A	Hetero	INTERGENIC
SBS	Chr5	1157774	T-A	Hetero	INTERGENIC
SBS	Chr5	18724479	C-T	Hetero	INTERGENIC
SBS	Chr5	28715748	C-T	Hetero	INTERGENIC
SBS	Chr6	22406968	G-A	Hetero	INTERGENIC
SBS	Chr6	30736394	A-T	Hetero	INTERGENIC
SBS	Chr7	278478	C-T	Hetero	INTERGENIC
SBS	Chr7	3122990	G-T	Hetero	INTERGENIC
SBS	Chr7	5343875	C-T	Hetero	INTERGENIC
SBS	Chr7	10840609	C-T	Hetero	INTERGENIC
SBS	Chr7	11272981	A-G	Hetero	INTERGENIC
SBS	Chr8	4493581	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g050800
SBS	Chr8	8034559	G-T	Homo	INTERGENIC
SBS	Chr8	11292893	G-A	Hetero	INTERGENIC
SBS	Chr8	13251498	C-T	Hetero	INTERGENIC
SBS	Chr8	15601265	G-T	Hetero	INTERGENIC
SBS	Chr8	16764941	C-G	Hetero	INTERGENIC
SBS	Chr9	898712	A-G	Hetero	INTERGENIC
SBS	Chr9	4088416	G-A	Hetero	INTERGENIC
SBS	Chr9	4689784	C-A	Hetero	INTERGENIC
SBS	Chr9	14987075	G-A	Hetero	INTERGENIC
SBS	Chr9	17246586	G-A	Hetero	INTERGENIC
SBS	Chr10	7405094	G-A	Hetero	INTERGENIC
SBS	Chr10	8807455	C-A	Homo	INTERGENIC
SBS	Chr10	13458016	A-G	Homo	INTERGENIC
SBS	Chr10	14181393	G-T	Hetero	INTRON
SBS	Chr11	4525566	G-T	Hetero	INTERGENIC
SBS	Chr11	8162100	C-A	Hetero	INTERGENIC
SBS	Chr11	8621990	G-A	Hetero	INTERGENIC
SBS	Chr11	9597521	C-T	Homo	INTERGENIC
SBS	Chr11	11767680	A-T	Hetero	INTERGENIC
SBS	Chr11	12226393	C-T	Hetero	INTERGENIC
SBS	Chr11	13508326	G-A	Hetero	INTERGENIC
SBS	Chr11	17203204	G-T	Hetero	INTRON
SBS	Chr11	18348600	A-T	Hetero	INTERGENIC
SBS	Chr11	27775105	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g226700
SBS	Chr12	1956900	C-T	Hetero	INTERGENIC
SBS	Chr12	7845309	G-C	Hetero	INTERGENIC
SBS	Chr12	9686066	G-A	Homo	INTERGENIC
SBS	Chr12	11923406	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g104200
SBS	Chr12	12033566	T-A	Homo	INTERGENIC
SBS	Chr12	14185634	G-A	Hetero	INTERGENIC
SBS	Chr12	21229123	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g166900
SBS	Chr12	24016208	T-C	Homo	INTERGENIC
SBS	Chr12	25516450	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	11490947	11490950	3
Deletion	Chr12	12056945	12056950	5
Deletion	Chr2	22329001	22339000	9999	OsKitaake02g216000
Deletion	Chr10	23616427	23616430	3
Deletion	Chr12	25459189	25459206	17
Deletion	Chr2	32743459	32743460	1
Deletion	Chr2	32743675	32743676	1	OsKitaake02g335500
Deletion	Chr2	33862967	33862968	1
Deletion	Chr3	34014083	34014085	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	22229119	22328720	OsKitaake02g216000
Inversion	Chr2	22229138	22339802

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes