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Mutant Information

Mutant Name	FN2243-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2243-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5280450 C-A Hetero INTERGENIC
SBS Chr1 6521472 G-A Homo INTRON
SBS Chr1 20523626 G-A Hetero INTERGENIC
SBS Chr1 31966426 C-T Homo INTERGENIC
SBS Chr1 38929232 G-A Hetero STOP_GAINED OsKitaake01g417700
SBS Chr2 16824456 C-A Hetero INTERGENIC
SBS Chr2 20942028 G-A Hetero INTERGENIC
SBS Chr2 20942029 G-A Hetero INTERGENIC
SBS Chr2 20942033 T-A Hetero INTERGENIC
SBS Chr2 20993682 G-A Hetero INTERGENIC
SBS Chr2 27501036 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 5068019 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 8182231 A-G Hetero SYNONYMOUS_CODING
SBS Chr3 9360123 G-A Hetero INTERGENIC
SBS Chr3 32283552 A-C Hetero UTR_5_PRIME
SBS Chr3 34251577 A-G Hetero INTERGENIC
SBS Chr3 34500605 C-G Hetero UTR_5_PRIME
SBS Chr4 7773041 G-T Hetero INTERGENIC
SBS Chr4 11362810 A-C Homo INTERGENIC
SBS Chr4 20887893 G-C Hetero INTERGENIC
SBS Chr4 22842657 G-A Hetero INTERGENIC
SBS Chr4 26965735 C-T Hetero UTR_5_PRIME
SBS Chr4 34144804 C-A Hetero INTERGENIC
SBS Chr6 10097901 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 10115797 C-A Hetero INTRON
SBS Chr6 16029251 G-A Hetero INTERGENIC
SBS Chr7 3701480 C-T Hetero INTERGENIC
SBS Chr7 12444161 C-G Hetero INTERGENIC
SBS Chr7 14771697 T-A Hetero UTR_3_PRIME
SBS Chr8 5879419 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g064100
SBS Chr8 7029139 C-T Hetero INTERGENIC
SBS Chr9 19818433 T-C Homo NON_SYNONYMOUS_CODING OsKitaake09g164100
SBS Chr9 20599359 G-T Hetero INTRON
SBS Chr10 1887359 G-A Hetero INTERGENIC
SBS Chr10 2950201 T-G Hetero INTERGENIC
SBS Chr10 13322670 C-G Homo INTERGENIC
SBS Chr10 21594720 T-A Hetero INTERGENIC
SBS Chr11 16801532 C-T Hetero INTERGENIC
SBS Chr11 21540310 G-A Hetero INTERGENIC
SBS Chr12 19262733 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 624737 624739 2
Deletion Chr11 8489001 9052000 562999 31
Deletion Chr3 13325950 13325961 11
Deletion Chr10 15146579 15146580 1 OsKitaake10g095900
Deletion Chr6 17749629 17749635 6
Deletion Chr10 19747908 19747911 3
Deletion Chr5 20481028 20481034 6
Deletion Chr6 23273022 23273023 1
Deletion Chr3 26843202 26843203 1
Deletion Chr2 31762629 31762630 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15986072 15986075 2
Insertion Chr4 21052760 21052768 7
Insertion Chr5 5453031 5453036 4
Insertion Chr6 20792989 20792991 1
Insertion Chr6 28008749 28008752 2
Insertion Chr10 2182906 2182909 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 9648056 9685857 OsKitaake12g093100
Inversion Chr12 9648128 9685851 OsKitaake12g093100
Inversion Chr3 34805278 34997559 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2880295 Chr3 16460201
Translocation Chr4 7651275 Chr3 34997563 OsKitaake03g382300
Translocation Chr4 7666822 Chr3 34805282 OsKitaake03g379400
Translocation Chr11 9055016 Chr3 16460606
Translocation Chr3 16459396 Chr2 10004395
Translocation Chr3 16460202 Chr2 10004393

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5280450	C-A	Hetero	INTERGENIC
SBS	Chr1	6521472	G-A	Homo	INTRON
SBS	Chr1	20523626	G-A	Hetero	INTERGENIC
SBS	Chr1	31966426	C-T	Homo	INTERGENIC
SBS	Chr1	38929232	G-A	Hetero	STOP_GAINED	OsKitaake01g417700
SBS	Chr2	16824456	C-A	Hetero	INTERGENIC
SBS	Chr2	20942028	G-A	Hetero	INTERGENIC
SBS	Chr2	20942029	G-A	Hetero	INTERGENIC
SBS	Chr2	20942033	T-A	Hetero	INTERGENIC
SBS	Chr2	20993682	G-A	Hetero	INTERGENIC
SBS	Chr2	27501036	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	5068019	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	8182231	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	9360123	G-A	Hetero	INTERGENIC
SBS	Chr3	32283552	A-C	Hetero	UTR_5_PRIME
SBS	Chr3	34251577	A-G	Hetero	INTERGENIC
SBS	Chr3	34500605	C-G	Hetero	UTR_5_PRIME
SBS	Chr4	7773041	G-T	Hetero	INTERGENIC
SBS	Chr4	11362810	A-C	Homo	INTERGENIC
SBS	Chr4	20887893	G-C	Hetero	INTERGENIC
SBS	Chr4	22842657	G-A	Hetero	INTERGENIC
SBS	Chr4	26965735	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	34144804	C-A	Hetero	INTERGENIC
SBS	Chr6	10097901	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	10115797	C-A	Hetero	INTRON
SBS	Chr6	16029251	G-A	Hetero	INTERGENIC
SBS	Chr7	3701480	C-T	Hetero	INTERGENIC
SBS	Chr7	12444161	C-G	Hetero	INTERGENIC
SBS	Chr7	14771697	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	5879419	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g064100
SBS	Chr8	7029139	C-T	Hetero	INTERGENIC
SBS	Chr9	19818433	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g164100
SBS	Chr9	20599359	G-T	Hetero	INTRON
SBS	Chr10	1887359	G-A	Hetero	INTERGENIC
SBS	Chr10	2950201	T-G	Hetero	INTERGENIC
SBS	Chr10	13322670	C-G	Homo	INTERGENIC
SBS	Chr10	21594720	T-A	Hetero	INTERGENIC
SBS	Chr11	16801532	C-T	Hetero	INTERGENIC
SBS	Chr11	21540310	G-A	Hetero	INTERGENIC
SBS	Chr12	19262733	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	624737	624739	2
Deletion	Chr11	8489001	9052000	562999	31
Deletion	Chr3	13325950	13325961	11
Deletion	Chr10	15146579	15146580	1	OsKitaake10g095900
Deletion	Chr6	17749629	17749635	6
Deletion	Chr10	19747908	19747911	3
Deletion	Chr5	20481028	20481034	6
Deletion	Chr6	23273022	23273023	1
Deletion	Chr3	26843202	26843203	1
Deletion	Chr2	31762629	31762630	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9648056	9685857	OsKitaake12g093100
Inversion	Chr12	9648128	9685851	OsKitaake12g093100
Inversion	Chr3	34805278	34997559	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes