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| Mutant Information |
|---|
| Mutant Name | FN2244-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2244-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3046099 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 11673637 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g140800 |
| SBS | Chr1 | 12237541 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13230773 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 20159989 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21329443 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g207716 |
| SBS | Chr1 | 29139983 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31171150 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g311500 |
| SBS | Chr2 | 4905428 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19237817 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 8387606 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 11380237 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14705032 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 21459060 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24214786 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 253122 | C-G | Homo | INTRON | |
| SBS | Chr6 | 9508355 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 23187293 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 30858006 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 8629322 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 28689828 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6585307 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8279362 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10972742 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 19769082 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 7344282 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 17368385 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 17750702 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21052328 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11228819 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 16204881 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1265165 | 1265176 | 11 | OsKitaake07g018300 |
| Deletion | Chr8 | 5529324 | 5529325 | 1 | OsKitaake08g060500 |
| Deletion | Chr7 | 6767107 | 6767112 | 5 | |
| Deletion | Chr2 | 9891170 | 9891173 | 3 | |
| Deletion | Chr5 | 13528594 | 13528601 | 7 | |
| Deletion | Chr7 | 13721001 | 13727000 | 5999 | |
| Deletion | Chr6 | 15560264 | 15560265 | 1 | |
| Deletion | Chr9 | 19458907 | 19458908 | 1 | OsKitaake09g158700 |
| Deletion | Chr9 | 19463141 | 19463146 | 5 | |
| Deletion | Chr11 | 19710001 | 19763000 | 52999 | 3 |
| Deletion | Chr12 | 20641276 | 20641282 | 6 | |
| Deletion | Chr12 | 26326887 | 26326891 | 4 | |
| Deletion | Chr1 | 31277348 | 31277355 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 13391532 | 13391535 | 2 | |
| Insertion | Chr5 | 29401543 | 29401551 | 7 | |
| Insertion | Chr11 | 11247494 | 11247519 | 24 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 8998819 | 9550088 | |
| Inversion | Chr9 | 9470384 | 9550082 |