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Mutant Information

Mutant Name	FN2245-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2245-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8147854 T-A Hetero INTERGENIC
SBS Chr1 20802548 C-G Homo NON_SYNONYMOUS_CODING OsKitaake01g203900
SBS Chr1 30421354 C-T Hetero INTERGENIC
SBS Chr1 38596934 C-T Hetero INTERGENIC
SBS Chr2 15239379 G-A Hetero INTERGENIC
SBS Chr2 15409206 G-A Hetero INTERGENIC
SBS Chr2 16401717 T-C Hetero UTR_3_PRIME
SBS Chr3 35829089 A-G Homo INTERGENIC
SBS Chr3 37681083 T-A Homo INTRON
SBS Chr4 15465083 T-C Homo INTERGENIC
SBS Chr4 28131619 G-A Homo INTERGENIC
SBS Chr4 33553352 C-T Hetero UTR_3_PRIME
SBS Chr5 10205936 C-G Hetero INTERGENIC
SBS Chr5 10424554 T-A Hetero INTERGENIC
SBS Chr5 22315087 G-A Hetero INTERGENIC
SBS Chr6 7153468 C-A Hetero INTERGENIC
SBS Chr7 18577567 G-T Homo INTERGENIC
SBS Chr8 8322155 C-T Hetero INTERGENIC
SBS Chr9 8851245 G-C Homo INTERGENIC
SBS Chr9 17922172 C-T Homo INTERGENIC
SBS Chr10 18760446 A-G Hetero INTRON
SBS Chr11 2901634 A-T Hetero INTERGENIC
SBS Chr11 6324717 C-T Homo INTERGENIC
SBS Chr11 7018927 G-A Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 854260 854269 9
Deletion Chr11 3500001 3709000 208999 31
Deletion Chr10 8675813 8675979 166
Deletion Chr1 9539001 9558000 18999 OsKitaake01g122200
Deletion Chr5 14362115 14362121 6
Deletion Chr12 16355558 16355560 2
Deletion Chr2 21928001 22015000 86999 11
Deletion Chr5 23268781 23268783 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25610951 25610954 2
Insertion Chr1 40458622 40458644 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8147854	T-A	Hetero	INTERGENIC
SBS	Chr1	20802548	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g203900
SBS	Chr1	30421354	C-T	Hetero	INTERGENIC
SBS	Chr1	38596934	C-T	Hetero	INTERGENIC
SBS	Chr2	15239379	G-A	Hetero	INTERGENIC
SBS	Chr2	15409206	G-A	Hetero	INTERGENIC
SBS	Chr2	16401717	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	35829089	A-G	Homo	INTERGENIC
SBS	Chr3	37681083	T-A	Homo	INTRON
SBS	Chr4	15465083	T-C	Homo	INTERGENIC
SBS	Chr4	28131619	G-A	Homo	INTERGENIC
SBS	Chr4	33553352	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	10205936	C-G	Hetero	INTERGENIC
SBS	Chr5	10424554	T-A	Hetero	INTERGENIC
SBS	Chr5	22315087	G-A	Hetero	INTERGENIC
SBS	Chr6	7153468	C-A	Hetero	INTERGENIC
SBS	Chr7	18577567	G-T	Homo	INTERGENIC
SBS	Chr8	8322155	C-T	Hetero	INTERGENIC
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr9	17922172	C-T	Homo	INTERGENIC
SBS	Chr10	18760446	A-G	Hetero	INTRON
SBS	Chr11	2901634	A-T	Hetero	INTERGENIC
SBS	Chr11	6324717	C-T	Homo	INTERGENIC
SBS	Chr11	7018927	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	854260	854269	9
Deletion	Chr11	3500001	3709000	208999	31
Deletion	Chr10	8675813	8675979	166
Deletion	Chr1	9539001	9558000	18999	OsKitaake01g122200
Deletion	Chr5	14362115	14362121	6
Deletion	Chr12	16355558	16355560	2
Deletion	Chr2	21928001	22015000	86999	11
Deletion	Chr5	23268781	23268783	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes