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Mutant Information

Mutant Name	FN2246-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2246-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19235083 C-A Homo INTERGENIC
SBS Chr1 21970090 G-A Hetero INTRON
SBS Chr1 24932280 G-A Hetero INTERGENIC
SBS Chr1 37261922 G-T Hetero INTERGENIC
SBS Chr1 37261923 T-G Hetero INTERGENIC
SBS Chr1 41421431 G-A Hetero INTERGENIC
SBS Chr2 25884026 C-G Hetero UTR_3_PRIME
SBS Chr2 26676782 A-T Hetero INTRON
SBS Chr2 31152450 C-A Hetero INTRON
SBS Chr3 9552062 C-T Homo INTERGENIC
SBS Chr3 9552063 C-A Homo INTERGENIC
SBS Chr3 11326412 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g155200
SBS Chr3 11326413 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g155200
SBS Chr3 11326414 A-T Homo NON_SYNONYMOUS_CODING OsKitaake03g155200
SBS Chr3 12949313 T-C Homo INTRON
SBS Chr3 27441437 T-C Homo INTERGENIC
SBS Chr3 29454206 T-A Hetero INTRON
SBS Chr4 7488741 C-G Hetero INTERGENIC
SBS Chr4 33466465 A-C Hetero INTERGENIC
SBS Chr4 34127040 T-C Homo INTERGENIC
SBS Chr5 15420624 G-T Hetero INTERGENIC
SBS Chr5 23050669 T-A Hetero INTERGENIC
SBS Chr6 8612448 A-T Homo INTERGENIC
SBS Chr6 9396184 C-G Homo INTERGENIC
SBS Chr6 27499639 G-A Homo INTERGENIC
SBS Chr7 9058927 T-A Homo INTERGENIC
SBS Chr7 9190372 C-A Homo INTERGENIC
SBS Chr7 11354669 C-G Homo INTERGENIC
SBS Chr8 1812134 G-A Homo INTERGENIC
SBS Chr8 10820042 C-T Homo INTERGENIC
SBS Chr8 21407102 T-C Hetero INTERGENIC
SBS Chr9 2906947 C-T Hetero INTERGENIC
SBS Chr9 2906950 C-T Hetero INTERGENIC
SBS Chr9 3758464 G-T Hetero INTERGENIC
SBS Chr9 15931253 T-C Homo UTR_3_PRIME
SBS Chr10 6858963 C-T Homo INTERGENIC
SBS Chr10 12875701 T-A Homo INTRON
SBS Chr11 14402449 G-A Homo INTERGENIC
SBS Chr12 14182996 G-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 70611 70616 5
Deletion Chr8 858081 858083 2
Deletion Chr5 4666506 4666507 1
Deletion Chr7 5134642 5134651 9
Deletion Chr9 8509791 8509814 23
Deletion Chr10 8675673 8675840 167
Deletion Chr7 13468114 13468136 22
Deletion Chr6 14665676 14665678 2
Deletion Chr10 18859917 18859943 26
Deletion Chr7 23719580 23719587 7
Deletion Chr7 28992443 28992459 16 OsKitaake07g276900
Deletion Chr2 30001417 30001426 9 OsKitaake02g304600
Deletion Chr1 41149599 41149609 10

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 26836802 26836804 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 13142033 13185343 OsKitaake12g110000
Inversion Chr12 13142428 13185349 OsKitaake12g110000

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 13142415 Chr1 35622494
Translocation Chr12 17823830 Chr6 9324397
Translocation Chr12 17847820 Chr6 9324382
Translocation Chr12 17848700 Chr1 35622520
Translocation Chr12 17856013 Chr10 9004486

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19235083	C-A	Homo	INTERGENIC
SBS	Chr1	21970090	G-A	Hetero	INTRON
SBS	Chr1	24932280	G-A	Hetero	INTERGENIC
SBS	Chr1	37261922	G-T	Hetero	INTERGENIC
SBS	Chr1	37261923	T-G	Hetero	INTERGENIC
SBS	Chr1	41421431	G-A	Hetero	INTERGENIC
SBS	Chr2	25884026	C-G	Hetero	UTR_3_PRIME
SBS	Chr2	26676782	A-T	Hetero	INTRON
SBS	Chr2	31152450	C-A	Hetero	INTRON
SBS	Chr3	9552062	C-T	Homo	INTERGENIC
SBS	Chr3	9552063	C-A	Homo	INTERGENIC
SBS	Chr3	11326412	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g155200
SBS	Chr3	11326413	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g155200
SBS	Chr3	11326414	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g155200
SBS	Chr3	12949313	T-C	Homo	INTRON
SBS	Chr3	27441437	T-C	Homo	INTERGENIC
SBS	Chr3	29454206	T-A	Hetero	INTRON
SBS	Chr4	7488741	C-G	Hetero	INTERGENIC
SBS	Chr4	33466465	A-C	Hetero	INTERGENIC
SBS	Chr4	34127040	T-C	Homo	INTERGENIC
SBS	Chr5	15420624	G-T	Hetero	INTERGENIC
SBS	Chr5	23050669	T-A	Hetero	INTERGENIC
SBS	Chr6	8612448	A-T	Homo	INTERGENIC
SBS	Chr6	9396184	C-G	Homo	INTERGENIC
SBS	Chr6	27499639	G-A	Homo	INTERGENIC
SBS	Chr7	9058927	T-A	Homo	INTERGENIC
SBS	Chr7	9190372	C-A	Homo	INTERGENIC
SBS	Chr7	11354669	C-G	Homo	INTERGENIC
SBS	Chr8	1812134	G-A	Homo	INTERGENIC
SBS	Chr8	10820042	C-T	Homo	INTERGENIC
SBS	Chr8	21407102	T-C	Hetero	INTERGENIC
SBS	Chr9	2906947	C-T	Hetero	INTERGENIC
SBS	Chr9	2906950	C-T	Hetero	INTERGENIC
SBS	Chr9	3758464	G-T	Hetero	INTERGENIC
SBS	Chr9	15931253	T-C	Homo	UTR_3_PRIME
SBS	Chr10	6858963	C-T	Homo	INTERGENIC
SBS	Chr10	12875701	T-A	Homo	INTRON
SBS	Chr11	14402449	G-A	Homo	INTERGENIC
SBS	Chr12	14182996	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	70611	70616	5
Deletion	Chr8	858081	858083	2
Deletion	Chr5	4666506	4666507	1
Deletion	Chr7	5134642	5134651	9
Deletion	Chr9	8509791	8509814	23
Deletion	Chr10	8675673	8675840	167
Deletion	Chr7	13468114	13468136	22
Deletion	Chr6	14665676	14665678	2
Deletion	Chr10	18859917	18859943	26
Deletion	Chr7	23719580	23719587	7
Deletion	Chr7	28992443	28992459	16	OsKitaake07g276900
Deletion	Chr2	30001417	30001426	9	OsKitaake02g304600
Deletion	Chr1	41149599	41149609	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	13142033	13185343	OsKitaake12g110000
Inversion	Chr12	13142428	13185349	OsKitaake12g110000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes