Search Kitaake

Mutant Information

Mutant Name	FN2247-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2247-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 5630186 A-G Hetero INTERGENIC
SBS Chr2 12854839 G-A Homo INTERGENIC
SBS Chr2 21710746 A-C Hetero INTERGENIC
SBS Chr2 24992872 T-C Hetero INTERGENIC
SBS Chr2 27598313 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g277466
SBS Chr4 20668812 C-A Homo INTERGENIC
SBS Chr4 22493978 A-C Hetero INTRON
SBS Chr4 29604673 G-T Hetero INTERGENIC
SBS Chr5 6835233 C-T Hetero INTERGENIC
SBS Chr5 8603424 T-C Hetero INTERGENIC
SBS Chr5 11432102 A-G Hetero INTERGENIC
SBS Chr5 14396080 T-C Hetero INTERGENIC
SBS Chr5 22911227 C-G Hetero INTRON
SBS Chr5 27029328 C-T Hetero INTERGENIC
SBS Chr5 30101204 C-T Hetero #VALUE!
SBS Chr6 13403441 C-T Hetero INTERGENIC
SBS Chr6 26040842 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g232400
SBS Chr6 26040843 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g232400
SBS Chr7 1852496 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g025700
SBS Chr7 8754201 G-A Hetero INTERGENIC
SBS Chr7 11208838 A-G Hetero INTERGENIC
SBS Chr7 14100773 A-T Hetero INTERGENIC
SBS Chr7 24887202 C-T Hetero INTERGENIC
SBS Chr7 26532579 C-A Hetero INTERGENIC
SBS Chr8 24698159 T-A Homo INTERGENIC
SBS Chr9 12375131 C-T Hetero INTERGENIC
SBS Chr9 15265234 G-A Homo INTERGENIC
SBS Chr9 18063452 G-A Hetero INTERGENIC
SBS Chr9 18175100 C-T Homo INTERGENIC
SBS Chr9 18175101 C-T Homo INTERGENIC
SBS Chr10 7425015 C-G Hetero INTERGENIC
SBS Chr10 12429301 C-T Hetero INTERGENIC
SBS Chr10 12822818 G-A Hetero INTERGENIC
SBS Chr10 16617077 T-C Hetero SYNONYMOUS_CODING
SBS Chr10 21770740 G-A Homo SYNONYMOUS_CODING
SBS Chr11 20366986 G-A Hetero INTERGENIC
SBS Chr11 26129299 A-G Homo INTERGENIC
SBS Chr12 24193863 A-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 5478936 5478958 22
Deletion Chr10 6369001 6388000 18999 OsKitaake10g043300
Deletion Chr3 12381268 12381269 1
Deletion Chr9 18885474 18885493 19
Deletion Chr7 24866746 24866751 5
Deletion Chr3 25914213 25914221 8 OsKitaake03g273100
Deletion Chr6 28336253 28336265 12
Deletion Chr8 28656001 28679000 22999 4
Deletion Chr4 30216001 30226000 9999 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 28483830 28483833 2
Insertion Chr6 26818878 26818881 2
Insertion Chr7 16380696 16380699 2
Insertion Chr8 10875146 10875155 8
Insertion Chr8 18990883 18990886 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 2828962 2933249 OsKitaake12g043600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 72896 Chr5 27340459
Translocation Chr12 1609649 Chr10 5983407 OsKitaake10g041200
Translocation Chr10 5981794 Chr5 27340241 OsKitaake10g041200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	5630186	A-G	Hetero	INTERGENIC
SBS	Chr2	12854839	G-A	Homo	INTERGENIC
SBS	Chr2	21710746	A-C	Hetero	INTERGENIC
SBS	Chr2	24992872	T-C	Hetero	INTERGENIC
SBS	Chr2	27598313	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g277466
SBS	Chr4	20668812	C-A	Homo	INTERGENIC
SBS	Chr4	22493978	A-C	Hetero	INTRON
SBS	Chr4	29604673	G-T	Hetero	INTERGENIC
SBS	Chr5	6835233	C-T	Hetero	INTERGENIC
SBS	Chr5	8603424	T-C	Hetero	INTERGENIC
SBS	Chr5	11432102	A-G	Hetero	INTERGENIC
SBS	Chr5	14396080	T-C	Hetero	INTERGENIC
SBS	Chr5	22911227	C-G	Hetero	INTRON
SBS	Chr5	27029328	C-T	Hetero	INTERGENIC
SBS	Chr5	30101204	C-T	Hetero	#VALUE!
SBS	Chr6	13403441	C-T	Hetero	INTERGENIC
SBS	Chr6	26040842	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g232400
SBS	Chr6	26040843	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g232400
SBS	Chr7	1852496	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g025700
SBS	Chr7	8754201	G-A	Hetero	INTERGENIC
SBS	Chr7	11208838	A-G	Hetero	INTERGENIC
SBS	Chr7	14100773	A-T	Hetero	INTERGENIC
SBS	Chr7	24887202	C-T	Hetero	INTERGENIC
SBS	Chr7	26532579	C-A	Hetero	INTERGENIC
SBS	Chr8	24698159	T-A	Homo	INTERGENIC
SBS	Chr9	12375131	C-T	Hetero	INTERGENIC
SBS	Chr9	15265234	G-A	Homo	INTERGENIC
SBS	Chr9	18063452	G-A	Hetero	INTERGENIC
SBS	Chr9	18175100	C-T	Homo	INTERGENIC
SBS	Chr9	18175101	C-T	Homo	INTERGENIC
SBS	Chr10	7425015	C-G	Hetero	INTERGENIC
SBS	Chr10	12429301	C-T	Hetero	INTERGENIC
SBS	Chr10	12822818	G-A	Hetero	INTERGENIC
SBS	Chr10	16617077	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr10	21770740	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	20366986	G-A	Hetero	INTERGENIC
SBS	Chr11	26129299	A-G	Homo	INTERGENIC
SBS	Chr12	24193863	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	5478936	5478958	22
Deletion	Chr10	6369001	6388000	18999	OsKitaake10g043300
Deletion	Chr3	12381268	12381269	1
Deletion	Chr9	18885474	18885493	19
Deletion	Chr7	24866746	24866751	5
Deletion	Chr3	25914213	25914221	8	OsKitaake03g273100
Deletion	Chr6	28336253	28336265	12
Deletion	Chr8	28656001	28679000	22999	4
Deletion	Chr4	30216001	30226000	9999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2828962	2933249	OsKitaake12g043600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes