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Mutant Information

Mutant Name	FN2249-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2249-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24172601 C-G Hetero INTERGENIC
SBS Chr1 41235617 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g450300
SBS Chr2 15426618 C-G Hetero INTERGENIC
SBS Chr2 25827766 A-G Hetero INTERGENIC
SBS Chr4 5559893 G-A Hetero INTERGENIC
SBS Chr4 9075573 C-T Hetero INTERGENIC
SBS Chr6 611794 G-A Hetero INTERGENIC
SBS Chr6 6887197 G-A Homo INTERGENIC
SBS Chr6 8778801 G-A Homo INTERGENIC
SBS Chr6 14143105 C-T Hetero INTRON
SBS Chr6 27679904 G-A Hetero UTR_5_PRIME
SBS Chr7 369549 T-A Hetero UTR_3_PRIME
SBS Chr7 2171948 C-A Hetero INTERGENIC
SBS Chr7 16699878 G-T Hetero INTERGENIC
SBS Chr7 23699579 G-A Hetero SPLICE_SITE_REGION
SBS Chr7 23699580 G-A Hetero SPLICE_SITE_DONOR OsKitaake07g208300
SBS Chr7 23981484 G-A Hetero INTERGENIC
SBS Chr7 27771658 G-A Hetero INTERGENIC
SBS Chr8 3189941 C-G Hetero INTERGENIC
SBS Chr8 11608360 C-T Hetero INTERGENIC
SBS Chr8 20317855 A-G Hetero INTERGENIC
SBS Chr8 25004837 A-G Hetero INTERGENIC
SBS Chr8 25957360 A-G Homo INTERGENIC
SBS Chr9 19297844 T-C Hetero INTRON
SBS Chr10 2479298 G-T Hetero INTERGENIC
SBS Chr10 3302698 C-G Hetero INTERGENIC
SBS Chr10 5309681 G-A Hetero INTERGENIC
SBS Chr10 17796853 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g123200
SBS Chr10 21996325 G-T Hetero INTERGENIC
SBS Chr10 22536778 G-A Hetero INTERGENIC
SBS Chr10 22536781 A-T Hetero INTERGENIC
SBS Chr10 22536782 G-T Hetero INTERGENIC
SBS Chr10 22537039 C-T Hetero INTERGENIC
SBS Chr10 22537040 A-T Hetero INTERGENIC
SBS Chr11 12987180 A-T Hetero INTERGENIC
SBS Chr11 14829363 G-A Hetero INTERGENIC
SBS Chr12 32914 C-T Hetero INTRON
SBS Chr12 32916 G-A Hetero INTRON
SBS Chr12 6938321 G-A Homo INTERGENIC
SBS Chr12 9078842 G-C Hetero INTRON
SBS Chr12 17387831 T-G Homo INTERGENIC
SBS Chr12 20556378 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2749258 2749411 153
Deletion Chr7 5177755 5177757 2
Deletion Chr12 5398278 5398280 2
Deletion Chr2 6062666 6062672 6
Deletion Chr12 8742830 8742832 2
Deletion Chr1 11107175 11107178 3
Deletion Chr10 17288917 17288920 3
Deletion Chr1 31336071 31336077 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31380454 31380457 2
Insertion Chr2 21400340 21400344 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 2854077 2922226 2
Inversion Chr2 2922230 2986897 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8667986 Chr1 17284457

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24172601	C-G	Hetero	INTERGENIC
SBS	Chr1	41235617	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g450300
SBS	Chr2	15426618	C-G	Hetero	INTERGENIC
SBS	Chr2	25827766	A-G	Hetero	INTERGENIC
SBS	Chr4	5559893	G-A	Hetero	INTERGENIC
SBS	Chr4	9075573	C-T	Hetero	INTERGENIC
SBS	Chr6	611794	G-A	Hetero	INTERGENIC
SBS	Chr6	6887197	G-A	Homo	INTERGENIC
SBS	Chr6	8778801	G-A	Homo	INTERGENIC
SBS	Chr6	14143105	C-T	Hetero	INTRON
SBS	Chr6	27679904	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	369549	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	2171948	C-A	Hetero	INTERGENIC
SBS	Chr7	16699878	G-T	Hetero	INTERGENIC
SBS	Chr7	23699579	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr7	23699580	G-A	Hetero	SPLICE_SITE_DONOR	OsKitaake07g208300
SBS	Chr7	23981484	G-A	Hetero	INTERGENIC
SBS	Chr7	27771658	G-A	Hetero	INTERGENIC
SBS	Chr8	3189941	C-G	Hetero	INTERGENIC
SBS	Chr8	11608360	C-T	Hetero	INTERGENIC
SBS	Chr8	20317855	A-G	Hetero	INTERGENIC
SBS	Chr8	25004837	A-G	Hetero	INTERGENIC
SBS	Chr8	25957360	A-G	Homo	INTERGENIC
SBS	Chr9	19297844	T-C	Hetero	INTRON
SBS	Chr10	2479298	G-T	Hetero	INTERGENIC
SBS	Chr10	3302698	C-G	Hetero	INTERGENIC
SBS	Chr10	5309681	G-A	Hetero	INTERGENIC
SBS	Chr10	17796853	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g123200
SBS	Chr10	21996325	G-T	Hetero	INTERGENIC
SBS	Chr10	22536778	G-A	Hetero	INTERGENIC
SBS	Chr10	22536781	A-T	Hetero	INTERGENIC
SBS	Chr10	22536782	G-T	Hetero	INTERGENIC
SBS	Chr10	22537039	C-T	Hetero	INTERGENIC
SBS	Chr10	22537040	A-T	Hetero	INTERGENIC
SBS	Chr11	12987180	A-T	Hetero	INTERGENIC
SBS	Chr11	14829363	G-A	Hetero	INTERGENIC
SBS	Chr12	32914	C-T	Hetero	INTRON
SBS	Chr12	32916	G-A	Hetero	INTRON
SBS	Chr12	6938321	G-A	Homo	INTERGENIC
SBS	Chr12	9078842	G-C	Hetero	INTRON
SBS	Chr12	17387831	T-G	Homo	INTERGENIC
SBS	Chr12	20556378	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2749258	2749411	153
Deletion	Chr7	5177755	5177757	2
Deletion	Chr12	5398278	5398280	2
Deletion	Chr2	6062666	6062672	6
Deletion	Chr12	8742830	8742832	2
Deletion	Chr1	11107175	11107178	3
Deletion	Chr10	17288917	17288920	3
Deletion	Chr1	31336071	31336077	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2854077	2922226	2
Inversion	Chr2	2922230	2986897	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes