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| Mutant Information |
|---|
| Mutant Name | FN2251-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2251-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22044524 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 36633521 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 40467307 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 18198537 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 13132596 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 36369312 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 7519769 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14719303 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 36371130 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12386672 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 14949210 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 19765740 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 27772771 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 29866699 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 17718121 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 11785863 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 14548556 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 18453152 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27434412 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 8340529 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8340530 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 22521886 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g205800 |
| SBS | Chr10 | 311423 | A-C | Hetero | INTRON | |
| SBS | Chr10 | 3062909 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15665196 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 3066856 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g043200 |
| SBS | Chr11 | 3066857 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 3891782 | C-T | Homo | INTERGENIC |
Deletions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 8865265 | 8865267 | 2 | OsKitaake03g121200 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 9120657 | 9120660 | 2 | |
| Insertion | Chr7 | 4976381 | 4976384 | 2 | |
| Insertion | Chr11 | 5345278 | 5345280 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 7602118 | 7625377 | |
| Inversion | Chr10 | 7602132 | 7625378 | |
| Inversion | Chr3 | 34103542 | 34447402 | 2 |
| Inversion | Chr3 | 34103544 | 34447407 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 8658499 | Chr1 | 17293322 | OsKitaake10g053166 |