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Mutant Information

Mutant Name	FN2252-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2252-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1256054 C-T Homo INTERGENIC
SBS Chr1 4828026 G-T Hetero INTERGENIC
SBS Chr1 18765747 A-G Hetero INTRON
SBS Chr1 18765752 A-C Hetero INTRON
SBS Chr1 27694677 G-T Hetero INTERGENIC
SBS Chr1 32293054 T-A Homo INTERGENIC
SBS Chr1 33420827 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g342000
SBS Chr2 18062194 T-C Hetero INTERGENIC
SBS Chr2 18300751 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g181700
SBS Chr2 21095962 G-A Homo START_GAINED
SBS Chr2 28511464 C-T Hetero INTERGENIC
SBS Chr2 28511465 T-A Hetero INTERGENIC
SBS Chr2 29265118 A-G Homo INTERGENIC
SBS Chr3 2569235 C-A Hetero INTERGENIC
SBS Chr3 24761966 T-C Hetero INTERGENIC
SBS Chr4 3250732 C-T Hetero INTERGENIC
SBS Chr4 4512398 C-G Hetero INTERGENIC
SBS Chr4 10686732 C-A Hetero INTERGENIC
SBS Chr4 14091878 G-A Homo INTERGENIC
SBS Chr4 14495633 T-A Hetero INTRON
SBS Chr4 15079470 T-C Hetero INTERGENIC
SBS Chr4 22181201 T-C Hetero INTERGENIC
SBS Chr4 22904318 T-C Hetero INTERGENIC
SBS Chr4 32360000 C-T Hetero INTERGENIC
SBS Chr5 7818670 G-A Hetero INTERGENIC
SBS Chr5 7824440 C-G Hetero INTERGENIC
SBS Chr5 15370379 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 15370380 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g118200
SBS Chr5 16580598 T-G Homo INTRON
SBS Chr5 27535114 C-G Hetero INTERGENIC
SBS Chr6 1422786 T-C Hetero INTERGENIC
SBS Chr6 15572187 C-T Hetero INTERGENIC
SBS Chr6 25130174 A-G Hetero INTERGENIC
SBS Chr6 29278038 G-A Hetero INTERGENIC
SBS Chr7 10115192 A-G Hetero INTRON
SBS Chr7 22651942 T-A Hetero INTERGENIC
SBS Chr7 27136788 C-T Hetero INTERGENIC
SBS Chr8 26673915 C-T Homo INTERGENIC
SBS Chr9 8222579 A-G Homo INTERGENIC
SBS Chr9 9722551 C-T Hetero INTERGENIC
SBS Chr10 17539090 T-C Hetero INTERGENIC
SBS Chr11 3247678 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g045000
SBS Chr11 3418756 C-G Hetero INTERGENIC
SBS Chr11 11631346 C-A Hetero INTERGENIC
SBS Chr11 22404939 C-T Hetero INTERGENIC
SBS Chr12 1600558 G-A Hetero INTERGENIC
SBS Chr12 9760519 C-T Hetero INTERGENIC
SBS Chr12 12131658 T-A Hetero INTERGENIC
SBS Chr12 17855361 T-C Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3376003 3376009 6
Deletion Chr4 5659298 5659301 3
Deletion Chr5 6590422 6590439 17
Deletion Chr7 8344220 8344232 12
Deletion Chr11 8735443 8735452 9 OsKitaake11g094400
Deletion Chr3 9453782 9453791 9
Deletion Chr10 9652497 9652498 1
Deletion Chr11 18206917 18206918 1
Deletion Chr7 18821391 18821397 6
Deletion Chr8 20710880 20710899 19
Deletion Chr11 20917362 20917366 4
Deletion Chr6 21853235 21853237 2
Deletion Chr3 24510834 24510835 1
Deletion Chr7 25834829 25834844 15
Deletion Chr7 27531662 27531672 10
Deletion Chr3 28168883 28168884 1
Deletion Chr6 28736868 28736871 3
Deletion Chr1 33620001 33629000 8999
Deletion Chr2 35666599 35666603 4
Deletion Chr1 40962511 40962512 1
Deletion Chr1 41297174 41297185 11

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr5 6645542 6645547 4
Insertion Chr6 1701110 1701113 2
Insertion Chr6 10677069 10677072 2
Insertion Chr10 11954927 11954931 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1256054	C-T	Homo	INTERGENIC
SBS	Chr1	4828026	G-T	Hetero	INTERGENIC
SBS	Chr1	18765747	A-G	Hetero	INTRON
SBS	Chr1	18765752	A-C	Hetero	INTRON
SBS	Chr1	27694677	G-T	Hetero	INTERGENIC
SBS	Chr1	32293054	T-A	Homo	INTERGENIC
SBS	Chr1	33420827	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g342000
SBS	Chr2	18062194	T-C	Hetero	INTERGENIC
SBS	Chr2	18300751	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g181700
SBS	Chr2	21095962	G-A	Homo	START_GAINED
SBS	Chr2	28511464	C-T	Hetero	INTERGENIC
SBS	Chr2	28511465	T-A	Hetero	INTERGENIC
SBS	Chr2	29265118	A-G	Homo	INTERGENIC
SBS	Chr3	2569235	C-A	Hetero	INTERGENIC
SBS	Chr3	24761966	T-C	Hetero	INTERGENIC
SBS	Chr4	3250732	C-T	Hetero	INTERGENIC
SBS	Chr4	4512398	C-G	Hetero	INTERGENIC
SBS	Chr4	10686732	C-A	Hetero	INTERGENIC
SBS	Chr4	14091878	G-A	Homo	INTERGENIC
SBS	Chr4	14495633	T-A	Hetero	INTRON
SBS	Chr4	15079470	T-C	Hetero	INTERGENIC
SBS	Chr4	22181201	T-C	Hetero	INTERGENIC
SBS	Chr4	22904318	T-C	Hetero	INTERGENIC
SBS	Chr4	32360000	C-T	Hetero	INTERGENIC
SBS	Chr5	7818670	G-A	Hetero	INTERGENIC
SBS	Chr5	7824440	C-G	Hetero	INTERGENIC
SBS	Chr5	15370379	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	15370380	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g118200
SBS	Chr5	16580598	T-G	Homo	INTRON
SBS	Chr5	27535114	C-G	Hetero	INTERGENIC
SBS	Chr6	1422786	T-C	Hetero	INTERGENIC
SBS	Chr6	15572187	C-T	Hetero	INTERGENIC
SBS	Chr6	25130174	A-G	Hetero	INTERGENIC
SBS	Chr6	29278038	G-A	Hetero	INTERGENIC
SBS	Chr7	10115192	A-G	Hetero	INTRON
SBS	Chr7	22651942	T-A	Hetero	INTERGENIC
SBS	Chr7	27136788	C-T	Hetero	INTERGENIC
SBS	Chr8	26673915	C-T	Homo	INTERGENIC
SBS	Chr9	8222579	A-G	Homo	INTERGENIC
SBS	Chr9	9722551	C-T	Hetero	INTERGENIC
SBS	Chr10	17539090	T-C	Hetero	INTERGENIC
SBS	Chr11	3247678	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g045000
SBS	Chr11	3418756	C-G	Hetero	INTERGENIC
SBS	Chr11	11631346	C-A	Hetero	INTERGENIC
SBS	Chr11	22404939	C-T	Hetero	INTERGENIC
SBS	Chr12	1600558	G-A	Hetero	INTERGENIC
SBS	Chr12	9760519	C-T	Hetero	INTERGENIC
SBS	Chr12	12131658	T-A	Hetero	INTERGENIC
SBS	Chr12	17855361	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3376003	3376009	6
Deletion	Chr4	5659298	5659301	3
Deletion	Chr5	6590422	6590439	17
Deletion	Chr7	8344220	8344232	12
Deletion	Chr11	8735443	8735452	9	OsKitaake11g094400
Deletion	Chr3	9453782	9453791	9
Deletion	Chr10	9652497	9652498	1
Deletion	Chr11	18206917	18206918	1
Deletion	Chr7	18821391	18821397	6
Deletion	Chr8	20710880	20710899	19
Deletion	Chr11	20917362	20917366	4
Deletion	Chr6	21853235	21853237	2
Deletion	Chr3	24510834	24510835	1
Deletion	Chr7	25834829	25834844	15
Deletion	Chr7	27531662	27531672	10
Deletion	Chr3	28168883	28168884	1
Deletion	Chr6	28736868	28736871	3
Deletion	Chr1	33620001	33629000	8999
Deletion	Chr2	35666599	35666603	4
Deletion	Chr1	40962511	40962512	1
Deletion	Chr1	41297174	41297185	11

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes