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| Mutant Information |
|---|
| Mutant Name | FN2254-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2254-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3422890 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 17059168 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 17644467 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 30431818 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31705523 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 34632073 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 6265888 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 25515076 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 449544 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 11144057 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14908732 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 20582484 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 20582485 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 36233981 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14191928 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g068000 |
| SBS | Chr4 | 14776680 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 17172413 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 24852057 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 13039857 | A-T | Homo | INTRON | |
| SBS | Chr5 | 21970827 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 27279051 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 17660329 | T-G | Hetero | INTRON | |
| SBS | Chr6 | 18584716 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 28915167 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 9733169 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18659396 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25423363 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4715531 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 9023869 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 800020 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 28016 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 148227 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 15477048 | T-C | Homo | INTRON | |
| SBS | Chr10 | 18815934 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18860314 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 7961211 | C-T | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 3599001 | 3916000 | 316999 | 42 |
| Deletion | Chr1 | 10432606 | 10432617 | 11 | |
| Deletion | Chr5 | 17578895 | 17578896 | 1 | OsKitaake05g134800 |
| Deletion | Chr3 | 19767420 | 19767421 | 1 | |
| Deletion | Chr8 | 20400084 | 20400092 | 8 | |
| Deletion | Chr10 | 22567317 | 22567319 | 2 | |
| Deletion | Chr4 | 33468801 | 33468805 | 4 | OsKitaake04g275200 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 27305047 | 27305050 | 2 | |
| Insertion | Chr12 | 24350746 | 24350749 | 2 | |
| Insertion | Chr12 | 25047437 | 25047440 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 3447805 | 3599146 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 6135253 | Chr1 | 9174196 | 2 |