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Mutant Information

Mutant Name	FN2255-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2255-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2762142 A-T Hetero INTRON
SBS Chr1 5884012 A-G Hetero INTERGENIC
SBS Chr2 16488820 A-C Homo INTERGENIC
SBS Chr2 19699568 T-C Hetero INTRON
SBS Chr2 36446253 A-G Hetero UTR_3_PRIME
SBS Chr4 4469977 C-T Hetero INTERGENIC
SBS Chr4 11482057 C-T Hetero INTERGENIC
SBS Chr6 27006563 C-T Hetero INTERGENIC
SBS Chr6 27006564 T-C Hetero INTERGENIC
SBS Chr7 899535 C-A Homo INTERGENIC
SBS Chr7 12229042 C-T Hetero INTERGENIC
SBS Chr7 12229050 A-G Hetero INTERGENIC
SBS Chr7 18841679 C-T Hetero INTRON
SBS Chr9 179906 G-A Hetero INTERGENIC
SBS Chr9 456403 G-A Hetero INTRON
SBS Chr9 1043990 T-G Hetero INTERGENIC
SBS Chr9 2827278 A-T Hetero INTERGENIC
SBS Chr9 21699275 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g190900
SBS Chr9 21777550 G-A Hetero INTERGENIC
SBS Chr10 3390214 C-G Homo INTERGENIC
SBS Chr10 5206270 G-A Hetero INTERGENIC
SBS Chr10 9008647 G-A Hetero INTERGENIC
SBS Chr11 27323148 T-C Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 351770 351772 2
Deletion Chr9 9493260 9493265 5
Deletion Chr12 19481004 19481012 8
Deletion Chr11 24729001 24906000 176999 22
Deletion Chr7 26933533 26933542 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22096588 22096593 4
Insertion Chr5 4142299 4142311 11
Insertion Chr7 5277196 5277199 2
Insertion Chr11 18908179 18908182 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 1598547 1793439
Inversion Chr3 1598560 1793441

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 372383 Chr8 9119365
Translocation Chr10 13132408 Chr7 28582654

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2762142	A-T	Hetero	INTRON
SBS	Chr1	5884012	A-G	Hetero	INTERGENIC
SBS	Chr2	16488820	A-C	Homo	INTERGENIC
SBS	Chr2	19699568	T-C	Hetero	INTRON
SBS	Chr2	36446253	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	4469977	C-T	Hetero	INTERGENIC
SBS	Chr4	11482057	C-T	Hetero	INTERGENIC
SBS	Chr6	27006563	C-T	Hetero	INTERGENIC
SBS	Chr6	27006564	T-C	Hetero	INTERGENIC
SBS	Chr7	899535	C-A	Homo	INTERGENIC
SBS	Chr7	12229042	C-T	Hetero	INTERGENIC
SBS	Chr7	12229050	A-G	Hetero	INTERGENIC
SBS	Chr7	18841679	C-T	Hetero	INTRON
SBS	Chr9	179906	G-A	Hetero	INTERGENIC
SBS	Chr9	456403	G-A	Hetero	INTRON
SBS	Chr9	1043990	T-G	Hetero	INTERGENIC
SBS	Chr9	2827278	A-T	Hetero	INTERGENIC
SBS	Chr9	21699275	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g190900
SBS	Chr9	21777550	G-A	Hetero	INTERGENIC
SBS	Chr10	3390214	C-G	Homo	INTERGENIC
SBS	Chr10	5206270	G-A	Hetero	INTERGENIC
SBS	Chr10	9008647	G-A	Hetero	INTERGENIC
SBS	Chr11	27323148	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	351770	351772	2
Deletion	Chr9	9493260	9493265	5
Deletion	Chr12	19481004	19481012	8
Deletion	Chr11	24729001	24906000	176999	22
Deletion	Chr7	26933533	26933542	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1598547	1793439
Inversion	Chr3	1598560	1793441

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes