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Mutant Information

Mutant Name	FN2257-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2257-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9753548 G-T Homo INTERGENIC
SBS Chr1 15575689 T-C Hetero INTERGENIC
SBS Chr1 16016782 G-A Hetero INTERGENIC
SBS Chr1 42387327 A-G Homo INTERGENIC
SBS Chr2 15290451 T-A Hetero INTRON
SBS Chr2 19597172 C-A Hetero UTR_5_PRIME
SBS Chr2 23115752 G-A Homo INTERGENIC
SBS Chr2 31440018 G-A Hetero INTERGENIC
SBS Chr3 27833222 T-C Homo INTERGENIC
SBS Chr3 35385946 G-T Homo INTERGENIC
SBS Chr4 1217368 T-C Hetero INTRON
SBS Chr4 1624387 C-T Hetero INTRON
SBS Chr5 9980611 G-A Hetero INTERGENIC
SBS Chr5 16072952 A-T Hetero INTERGENIC
SBS Chr5 21729045 C-T Hetero INTERGENIC
SBS Chr5 26215492 G-A Homo INTERGENIC
SBS Chr6 8678500 C-T Homo INTERGENIC
SBS Chr6 11890096 C-A Homo INTERGENIC
SBS Chr6 18474187 G-A Hetero INTERGENIC
SBS Chr6 25307680 C-A Hetero UTR_3_PRIME
SBS Chr7 16104245 T-C Homo INTERGENIC
SBS Chr7 23809123 A-T Hetero INTERGENIC
SBS Chr8 1354005 G-A Homo INTERGENIC
SBS Chr8 13788506 C-T Homo INTERGENIC
SBS Chr8 24395032 A-G Homo INTERGENIC
SBS Chr9 1583772 G-T Hetero INTERGENIC
SBS Chr9 3178446 T-C Homo INTERGENIC
SBS Chr9 14227416 C-A Hetero INTERGENIC
SBS Chr9 17531927 A-T Hetero INTERGENIC
SBS Chr10 14033226 C-A Hetero INTRON
SBS Chr11 8246140 G-A Hetero UTR_5_PRIME
SBS Chr11 21314794 C-T Homo INTERGENIC
SBS Chr12 1692037 T-C Homo INTERGENIC
SBS Chr12 10186302 C-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 845759 845775 16
Deletion Chr3 4109017 4109019 2
Deletion Chr11 4365271 4365273 2
Deletion Chr9 7227820 7227827 7
Deletion Chr10 11342001 11362000 19999 2
Deletion Chr8 16691636 16691638 2
Deletion Chr8 20291723 20291726 3 OsKitaake08g149700
Deletion Chr8 24568001 24614000 45999 6
Deletion Chr2 25048136 25048145 9
Deletion Chr2 27273928 27273938 10
Deletion Chr4 30509641 30509643 2
Deletion Chr1 40353650 40353655 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 232446 232449 2
Insertion Chr1 2772071 2772074 2
Insertion Chr1 5460621 5460624 2
Insertion Chr9 20138539 20138542 2
Insertion Chr10 630253 630256 2
Insertion Chr11 12504628 12504632 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6171291 6475355
Inversion Chr2 14572399 14641752
Inversion Chr2 14602906 14861534
Inversion Chr2 14745124 14861550

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1456570 Chr1 21770452 2
Translocation Chr8 1456582 Chr1 21770077 2
Translocation Chr11 8214125 Chr1 12212314
Translocation Chr8 10945390 Chr1 21770075 OsKitaake01g209900
Translocation Chr8 10945398 Chr1 21768972 OsKitaake01g209900
Translocation Chr8 22410491 Chr1 21690991 2
Translocation Chr8 22410581 Chr1 21689651 2
Translocation Chr8 24613349 Chr2 14602909 OsKitaake08g191700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9753548	G-T	Homo	INTERGENIC
SBS	Chr1	15575689	T-C	Hetero	INTERGENIC
SBS	Chr1	16016782	G-A	Hetero	INTERGENIC
SBS	Chr1	42387327	A-G	Homo	INTERGENIC
SBS	Chr2	15290451	T-A	Hetero	INTRON
SBS	Chr2	19597172	C-A	Hetero	UTR_5_PRIME
SBS	Chr2	23115752	G-A	Homo	INTERGENIC
SBS	Chr2	31440018	G-A	Hetero	INTERGENIC
SBS	Chr3	27833222	T-C	Homo	INTERGENIC
SBS	Chr3	35385946	G-T	Homo	INTERGENIC
SBS	Chr4	1217368	T-C	Hetero	INTRON
SBS	Chr4	1624387	C-T	Hetero	INTRON
SBS	Chr5	9980611	G-A	Hetero	INTERGENIC
SBS	Chr5	16072952	A-T	Hetero	INTERGENIC
SBS	Chr5	21729045	C-T	Hetero	INTERGENIC
SBS	Chr5	26215492	G-A	Homo	INTERGENIC
SBS	Chr6	8678500	C-T	Homo	INTERGENIC
SBS	Chr6	11890096	C-A	Homo	INTERGENIC
SBS	Chr6	18474187	G-A	Hetero	INTERGENIC
SBS	Chr6	25307680	C-A	Hetero	UTR_3_PRIME
SBS	Chr7	16104245	T-C	Homo	INTERGENIC
SBS	Chr7	23809123	A-T	Hetero	INTERGENIC
SBS	Chr8	1354005	G-A	Homo	INTERGENIC
SBS	Chr8	13788506	C-T	Homo	INTERGENIC
SBS	Chr8	24395032	A-G	Homo	INTERGENIC
SBS	Chr9	1583772	G-T	Hetero	INTERGENIC
SBS	Chr9	3178446	T-C	Homo	INTERGENIC
SBS	Chr9	14227416	C-A	Hetero	INTERGENIC
SBS	Chr9	17531927	A-T	Hetero	INTERGENIC
SBS	Chr10	14033226	C-A	Hetero	INTRON
SBS	Chr11	8246140	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	21314794	C-T	Homo	INTERGENIC
SBS	Chr12	1692037	T-C	Homo	INTERGENIC
SBS	Chr12	10186302	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	845759	845775	16
Deletion	Chr3	4109017	4109019	2
Deletion	Chr11	4365271	4365273	2
Deletion	Chr9	7227820	7227827	7
Deletion	Chr10	11342001	11362000	19999	2
Deletion	Chr8	16691636	16691638	2
Deletion	Chr8	20291723	20291726	3	OsKitaake08g149700
Deletion	Chr8	24568001	24614000	45999	6
Deletion	Chr2	25048136	25048145	9
Deletion	Chr2	27273928	27273938	10
Deletion	Chr4	30509641	30509643	2
Deletion	Chr1	40353650	40353655	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6171291	6475355
Inversion	Chr2	14572399	14641752
Inversion	Chr2	14602906	14861534
Inversion	Chr2	14745124	14861550

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes